Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41970 493 / 1e-175 Metal-dependent protein hydrolase (.1) AT3G49320 489 / 2e-174 Metal-dependent protein hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017324 [exp] 507 / 0 AT5G41970 574 / 0.0 Metal-dependent protein hydrolase (.1) Lus10033229 [exp] 493 / 3e-176 AT5G41970 573 / 0.0 Metal-dependent protein hydrolase (.1) Lus10000877 [exp] 394 / 2e-136 AT5G41970 456 / 9e-161 Metal-dependent protein hydrolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G007900 [exp] 520 / 0 AT3G49320 525 / 0.0 Metal-dependent protein hydrolase (.1) Potri.003G145900 [exp] 499 / 4e-178 AT5G41970 557 / 0.0 Metal-dependent protein hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03690 [flax] [poplar] UPF0160 Uncharacterised protein family (UPF0160)
Representative CDS sequence Show only first row Show all	>Lus10008867 pacid=23144226 polypeptide=Lus10008867 locus=Lus10008867.g ID=Lus10008867.BGIv1.0 annot-version=v1.0 ATGTTTGCTTTGGGAGTTCGAAGTTCGATCCACAGCTGCTTCCACTTCAGGAATCTTCTACACAGCACCGCCATTACAGAAAGATTCACTACCCGTCTCT GCGCTTTCTCCACCGCCACAGCGCCTAGGAAGCGAGTCGGCACTCACAACGGCAGCTTTCACTGTGACGAAGCTCTCGCCTGCTTCATGATTCGTCTCAC TGATAAATTCTCCAATGCTGAAATCGTCCGCACCAGAGACGTTAAGGTTCTGGAGACGCTAGATGCAGTTGTTGATGTAGGAGGAGTGTACGATCCGAGC TGTGATCGGTATGATCATCATCAGAAGGGATTTGACCAAGTGTTTGGCAATGGCTTCACCACCAAGCTCAGCAGCGCTGGCCTCGTCTACAAGCATTACG GAGCTCAGATTATTGCAAAGGAGGTTCAGTTAGATGGACAATCGGAAGTGCACAGGCTATATCTCGCCGTCTACAAGAATTTTGTTGAGGCGGTTGATGC TGTTGACAATGGGATTAATCAGTATGACTCAGATAGCCCCCCTAGATATGTTAATAATACAAGTTTATCAAGCCGAGTAGCAAAACTGAATCTGGACTGG ATAGAATCTGATCAGTCTTCTGAGAAAGAGAATGAAGCATTTGGACGCGCTATGGAGCTTGCTGGTTCTGAATTTTTGGAGAGTATTCGCTTCCATGCAA AATCTTGGTTACCAGCTAGATCAATTGTGAAGCAGTGTCTCACTTCAAGAGAACAGGTCGATGCCAGTGGAGAAATCATGGTTCTGAATAAATCTTGCCC CTGGAAGCTCCACATATTTGACCTGGAGCAGGAGCTGAACTTGATCCCGTCCGTAAAATATGTTCTTTACAAGGATGATAGGAGTGAAAATTGGCGTATA CAGGCAGTAGCTGTATCATCTGATAATTTCGAAAGCAGGAAACCTTTGCCAGCGTCCTGGAGAGGTTTGGAAAATGATCAACTCTCAGAAGTATCAGGGA TCCCAGGCTGTGTGTTTGTCCATGCAAGTGGGTTCATTGGTGGAAATCGAAGTTATGAAGGTGCTTTAGCAATGGCAAGAAGTTCTCTAAGGGCTTCTTA A
AA sequence Show only first row Show all	>Lus10008867 pacid=23144226 polypeptide=Lus10008867 locus=Lus10008867.g ID=Lus10008867.BGIv1.0 annot-version=v1.0 MFALGVRSSIHSCFHFRNLLHSTAITERFTTRLCAFSTATAPRKRVGTHNGSFHCDEALACFMIRLTDKFSNAEIVRTRDVKVLETLDAVVDVGGVYDPS CDRYDHHQKGFDQVFGNGFTTKLSSAGLVYKHYGAQIIAKEVQLDGQSEVHRLYLAVYKNFVEAVDAVDNGINQYDSDSPPRYVNNTSLSSRVAKLNLDW IESDQSSEKENEAFGRAMELAGSEFLESIRFHAKSWLPARSIVKQCLTSREQVDASGEIMVLNKSCPWKLHIFDLEQELNLIPSVKYVLYKDDRSENWRI QAVAVSSDNFESRKPLPASWRGLENDQLSEVSGIPGCVFVHASGFIGGNRSYEGALAMARSSLRAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41970			Metal-dependent protein hydrol...		Lus10008867 [exp]	0	1
AT5G15610			Proteasome component (PCI) dom...		Lus10013192 [exp]	1.4	0.8935
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10007430 [exp]	5.5	0.8962
AT5G15610			Proteasome component (PCI) dom...		Lus10030706 [exp]	10.8	0.8801
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Lus10034315 [exp]	16.7	0.8575
AT2G46290			Transducin/WD40 repeat-like su...		Lus10021857 [exp]	21.9	0.8553
AT2G34040			Apoptosis inhibitory protein 5...		Lus10005277 [exp]	26.3	0.8319
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10016015 [exp]	33.2	0.8637
AT1G71680			Transmembrane amino acid trans...		Lus10036933 [exp]	33.5	0.8685
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10022679 [exp]	35.0	0.8668
AT2G41460		ARP	apurinic endonuclease-redox pr...		Lus10000437 [exp]	36.3	0.8508

Compare expression of checked genes

Lus10008867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.