Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53530 502 / 0 VPS26A vacuolar protein sorting 26A (.1) AT4G27690 502 / 0 VPS26B vacuolar protein sorting 26B (.1.2) AT1G48550 52 / 1e-07 Vacuolar protein sorting-associated protein 26 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023242 [exp] 565 / 0 AT5G53530 538 / 0.0 vacuolar protein sorting 26A (.1) Lus10037421 [exp] 478 / 5e-172 AT5G53530 508 / 0.0 vacuolar protein sorting 26A (.1) Lus10041291 [exp] 286 / 1e-95 AT5G53530 432 / 3e-153 vacuolar protein sorting 26A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G081300 [exp] 520 / 0 AT4G27690 566 / 0.0 vacuolar protein sorting 26B (.1.2) Potri.018G150900 [exp] 508 / 0 AT4G27690 542 / 0.0 vacuolar protein sorting 26B (.1.2) Potri.001G222500 [exp] 488 / 2e-176 AT5G53530 523 / 0.0 vacuolar protein sorting 26A (.1) Potri.009G021200 [exp] 485 / 4e-175 AT5G53530 519 / 0.0 vacuolar protein sorting 26A (.1) Potri.015G037600 [exp] 50 / 9e-07 AT1G48550 481 / 5e-172 Vacuolar protein sorting-associated protein 26 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0135 [flax] [poplar] Arrestin_N-like PF03643 [flax] [poplar] Vps26 Vacuolar protein sorting-associated protein 26
Representative CDS sequence Show only first row Show all	>Lus10008868 pacid=23144238 polypeptide=Lus10008868 locus=Lus10008868.g ID=Lus10008868.BGIv1.0 annot-version=v1.0 ATGCGGAAACAGGTTCCTGTGAAGAAGGAGAACGGCCAAACTGTTATGGTTCCGCTGTTTCAGAGCCAAGAAAGTGTCGCAGGAAAGGTTGTGATTGAAC CACCTCTAGGGAAGAAGATCGAACACAATGGTATTAAGGTTGAGCTTCTTGGTCAGATAGAGATGTACTTTGACAGAGGAAGTTTTTATGACTTTACTTC GCTTGTACGTGAACTGGAGGTCCCTGGAGAAATATCTGAAATAAAAAACTATCCATTTGAATTCTCCACCGTCGAAATGCCGTACGAGACATACAATGGG GTGAATGTAAGGCTTAGGTATGTTCTCAGAGTGACTATTAGCCGCGGGTACGCAGGGAGTATAATTGAATACCAGGACTTTGTGGTACGGAACTATTCTC CATCTCCGACTGTAAACAATAGTATCAAGATGGAAGTTGGAATTGAGGATTGTCTGCATATTGAGTTTGAGTACAATAAAAGCAAGTATCATCTGAAAGA CGTGATTATTGGGAAAATCTATTTTCTCCTCGTAAGAATCAAAATAAAAAACATGGACCTCGAGATCAGGCGCAGGGAGTCAACTGGATCAGGTTCCAAT ACCCATGTCGAGACCGAAACCCTCGCGAAATTTGAATTGATGGATGGAGCTCCTGTCAGAGGTGAGTCAATTCCAGTGAGACTGTTTCTTAGCCCTTATG ATCTGACACCGACATACCGGAATATCAACAACAAGTTCAGTGTGAAGTACTATTTGAACCTAGTCCTGGTGGATGAAGAGGACCGCCGCTATTTCAAGCA GCAGGAGATTACGATATACAGGATGCAGGAAGGTTCCTGA
AA sequence Show only first row Show all	>Lus10008868 pacid=23144238 polypeptide=Lus10008868 locus=Lus10008868.g ID=Lus10008868.BGIv1.0 annot-version=v1.0 MRKQVPVKKENGQTVMVPLFQSQESVAGKVVIEPPLGKKIEHNGIKVELLGQIEMYFDRGSFYDFTSLVRELEVPGEISEIKNYPFEFSTVEMPYETYNG VNVRLRYVLRVTISRGYAGSIIEYQDFVVRNYSPSPTVNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGSN THVETETLAKFELMDGAPVRGESIPVRLFLSPYDLTPTYRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITIYRMQEGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10008868 [exp]	0	1
					Lus10009362 [exp]	1.4	0.9331
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10003808 [exp]	1.4	0.9380
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10026038 [exp]	2.8	0.9200
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Lus10034344 [exp]	3.6	0.9081
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10021175 [exp]	4.2	0.9172
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Lus10042055 [exp]	4.6	0.9168
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10025309 [exp]	6.3	0.9188
AT1G15860			Domain of unknown function (DU...		Lus10039198 [exp]	6.9	0.9132
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Lus10004374 [exp]	7.7	0.9105
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10016651 [exp]	8.1	0.9271

Compare expression of checked genes

Lus10008868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.