Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23880 122 / 4e-31 F-box and associated interaction domains-containing protein (.1) AT4G12560 112 / 2e-27 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G06240 103 / 3e-24 F-box family protein (.1) AT4G22390 94 / 4e-21 F-box associated ubiquitination effector family protein (.1) AT4G19940 79 / 8e-16 F-box and associated interaction domains-containing protein (.1) AT1G33530 72 / 1e-13 F-box family protein (.1) AT4G19930 71 / 3e-13 F-box and associated interaction domains-containing protein (.1) AT3G17710 64 / 4e-11 F-box and associated interaction domains-containing protein (.1) AT3G07870 64 / 8e-11 F-box and associated interaction domains-containing protein (.1) AT1G70380 63 / 1e-10 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023239 [exp] 632 / 0 AT3G23880 130 / 3e-34 F-box and associated interaction domains-containing protein (.1) Lus10008871 [exp] 514 / 0 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10023238 [exp] 512 / 0 AT3G23880 126 / 6e-33 F-box and associated interaction domains-containing protein (.1) Lus10039024 [exp] 110 / 9e-27 AT4G12560 333 / 3e-111 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10039593 [exp] 84 / 9e-19 AT4G12560 75 / 9e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10038603 [exp] 87 / 2e-18 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10010910 [exp] 78 / 2e-15 AT3G23880 101 / 1e-23 F-box and associated interaction domains-containing protein (.1) Lus10014935 [exp] 76 / 6e-15 AT3G06240 84 / 2e-17 F-box family protein (.1) Lus10026587 [exp] 76 / 6e-15 AT3G06240 104 / 3e-24 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G199800 [exp] 210 / 2e-63 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.006G013000 [exp] 140 / 1e-37 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058900 [exp] 128 / 2e-33 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.001G035500 [exp] 122 / 6e-31 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318400 [exp] 119 / 6e-30 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.001G318300 [exp] 117 / 1e-29 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.010G154700 [exp] 111 / 4e-27 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012500 [exp] 111 / 4e-27 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058000 [exp] 110 / 7e-27 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.006G013200 [exp] 110 / 1e-26 AT4G12560 289 / 4e-94 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008870 pacid=23144265 polypeptide=Lus10008870 locus=Lus10008870.g ID=Lus10008870.BGIv1.0 annot-version=v1.0 ATGCCGACACCGATACCTGACGTCGCCGGCGATAACCCAGCAGCCTTTACCTCCGCCACCGTCCTCCCTACGGACTACATCATCGAAATCCTCACTCGTC TGCCAGTCAAACCCCTCCTACGCTTCAAATCCGTCTCCAAATCGTTCAAAATCCTATTCTCCAGCACAGACTTCATCAACCACCACCTGAAACGCTACAA ATCCACCGATAACAATAACCTCCGAAATCAACTCCTCCTCGTTCCGTCCACCTCAAAACTCGGGTACAGCTCCTGTACTCTGGAGTCTCTGTACGAGATC CCACCACATCCCAGCTTCGCCGACCTCAACGATTCGCCGTTTCTAATCGCACCGGATCGGAAACCGTATTGGCTCGTCGGATCCTGCGACGGATTAGTCT GCGTAGCTGTTAGTAAACGGTCGGTGGCTTTATGGAATCCATCCACCAGGGCTTTCTCCACTCTCCCGCAGTTGGATGATGATGATGGTAAACAGGGGAG GAGATGCTACCCGGTTTTCGGGTTCGGTTTGGATAGTCTGGCCGACGATTATAAGGTGGTTGCCGTTTCCTGCTACCCGAACAAAGACGCCAGGACAGTT GCCGCAGCAGCGCCGTCAGGTGTTGTTCAGGTATATTCAATGAAATCCAGAGTTTGGAAGAGGATCGAAGATTTCAAGTACGGCCTCCCCTGCAACTACC CAGGGAAATACGTGAACAACACTCTGAATTTCCTGATGGACAACGAATCAAGCTCGATCGTGTCACTCGACTTACACAGTTCGACATATCGAGAAATAAC GCAGCCCGAAGACTCGAAAGAGGACGATACAATCATCAGCCACCACCAGAAGACGATGGGGGTGGTGGAAGATTGCCTGTGCGTGATGTACCACCGCCAC GGGGAGTATTCGGATTTATGGGTGATGAAAGAGTTCGGAGTGACGGAATCGTGGACCAAATTGTTCAGGATCGAAATGAGGGATCATGAGGAGCTTCGTT GGCTGCAGTATTTCATGCCGGTTCATGTCTACGGCGGGAAAGCTCTGCTGTGGTTGTGGTCGAGTATTGCTGTGTATAGTTTTGAGGATGGGTGTGTTGT GTATCGGTCGTCTGATGGTGTCTGGTCCTGTCAGGTTTTTATGGAGAGCTTGGTTTCTCCTGAAATGGAAAATTATTGA
AA sequence Show only first row Show all	>Lus10008870 pacid=23144265 polypeptide=Lus10008870 locus=Lus10008870.g ID=Lus10008870.BGIv1.0 annot-version=v1.0 MPTPIPDVAGDNPAAFTSATVLPTDYIIEILTRLPVKPLLRFKSVSKSFKILFSSTDFINHHLKRYKSTDNNNLRNQLLLVPSTSKLGYSSCTLESLYEI PPHPSFADLNDSPFLIAPDRKPYWLVGSCDGLVCVAVSKRSVALWNPSTRAFSTLPQLDDDDGKQGRRCYPVFGFGLDSLADDYKVVAVSCYPNKDARTV AAAAPSGVVQVYSMKSRVWKRIEDFKYGLPCNYPGKYVNNTLNFLMDNESSSIVSLDLHSSTYREITQPEDSKEDDTIISHHQKTMGVVEDCLCVMYHRH GEYSDLWVMKEFGVTESWTKLFRIEMRDHEELRWLQYFMPVHVYGGKALLWLWSSIAVYSFEDGCVVYRSSDGVWSCQVFMESLVSPEMENY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23880			F-box and associated interacti...		Lus10008870 [exp]	0	1
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10014706 [exp]	1.4	0.9155
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10029405 [exp]	1.4	0.9383
AT5G65550			UDP-Glycosyltransferase superf...		Lus10042242 [exp]	2.8	0.9044
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Lus10015232 [exp]	3.0	0.9144
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Lus10003707 [exp]	4.7	0.8774
AT5G25280			serine-rich protein-related (....		Lus10038100 [exp]	5.0	0.9017
AT2G23140			RING/U-box superfamily protein...		Lus10032023 [exp]	6.0	0.8847
AT1G49780		PUB26	plant U-box 26 (.1)		Lus10019842 [exp]	7.1	0.8725
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10003333 [exp]	7.7	0.8867
AT3G23880			F-box and associated interacti...		Lus10023238 [exp]	8.9	0.8824

Compare expression of checked genes

Lus10008870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.