Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 135 / 6e-36 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G23880 123 / 1e-31 F-box and associated interaction domains-containing protein (.1) AT3G06240 118 / 2e-29 F-box family protein (.1) AT4G22390 106 / 3e-25 F-box associated ubiquitination effector family protein (.1) AT2G02030 86 / 2e-18 F-box family protein (.1) AT1G33530 86 / 3e-18 F-box family protein (.1) AT1G12870 86 / 4e-18 F-box and associated interaction domains-containing protein (.1) AT3G07870 83 / 3e-17 F-box and associated interaction domains-containing protein (.1) AT1G11270 81 / 8e-17 F-box and associated interaction domains-containing protein (.1.2.3) AT1G09650 78 / 1e-15 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023238 [exp] 603 / 0 AT3G23880 126 / 6e-33 F-box and associated interaction domains-containing protein (.1) Lus10008870 [exp] 480 / 7e-170 AT3G23880 126 / 9e-33 F-box and associated interaction domains-containing protein (.1) Lus10023239 [exp] 439 / 5e-154 AT3G23880 130 / 3e-34 F-box and associated interaction domains-containing protein (.1) Lus10039024 [exp] 126 / 2e-32 AT4G12560 333 / 3e-111 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10010910 [exp] 109 / 2e-26 AT3G23880 101 / 1e-23 F-box and associated interaction domains-containing protein (.1) Lus10013873 [exp] 105 / 6e-25 AT3G06240 104 / 2e-24 F-box family protein (.1) Lus10013872 [exp] 102 / 8e-24 AT3G06240 101 / 2e-23 F-box family protein (.1) Lus10026587 [exp] 102 / 9e-24 AT3G06240 104 / 3e-24 F-box family protein (.1) Lus10037892 [exp] 99 / 1e-22 AT3G06240 107 / 7e-26 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G199800 [exp] 220 / 2e-67 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.006G013000 [exp] 158 / 3e-44 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G035500 [exp] 140 / 1e-37 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058900 [exp] 138 / 4e-37 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.016G012500 [exp] 124 / 1e-31 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G154700 [exp] 124 / 1e-31 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318400 [exp] 120 / 1e-30 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.017G058000 [exp] 117 / 1e-29 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.006G013200 [exp] 116 / 7e-29 AT4G12560 289 / 4e-94 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G011400 [exp] 115 / 1e-28 AT4G12560 142 / 2e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008871 pacid=23144217 polypeptide=Lus10008871 locus=Lus10008871.g ID=Lus10008871.BGIv1.0 annot-version=v1.0 ATGCCGAAGCTGAGGCCGGGCATTGCCGGCGACGACGAAGCAGCCTCCACCGGTGAGCCACATCAACTTCGTCCTTCCTCCGCCACCGTCCTCCCACCGG ACTACATCACAGAAATCCTTACTCGTCTTCCAGTCAAACCCCTGCTACGCTTCAAATCCGTCTCCAAATCTTTCAAATCCCTAATCCCCGGCAGAGATTT CATCAAACACCACCTGAATCGCCTCAAATCCTCCAAAAATCCACTCCTCCTCATCTCACCCGCCTCAAAACTCGGCTACAGCTCCTGTACTCTGGAGTCT CTGTACCAGATCCCACCGCCACATCCCAGCTTCACCGACCTCGATCACGCCCCGACTCTAATCGAACCGCACAGTAAGCCTTACTGGCTCGTCGGATCTT GCGACGGATTAATCTGCGTAGCTGTTAAGCACCGGTCGGTAGTTCTATGGAATCCATCCACCAGAGCTTTCTCCACTCTCCCACCACAATTGGATGACGA TGGTGAACTGGGCAGGAGATCACGCTACTCGGTCTTCGGGTTCGGTTACGACAGTCTGACTGACGATTACAAGGTGGTTTCCATTTCCTGCTACCCGAAC AAAGACGCTCCTTTGGCGACTGTTCAGCTATGTTCAGTCAAGTCTAAGGTTTGGAAGAGGATTGAAGATTTCAAATACGGCATTCCCTGCAATTCCCCAG GGAAATACGTGAGCAACACTTTGAATTGGGTGATGGATAACGAGTCGAGCTCGATCGTGTCGCTTGACTTGCACAGCGAAACATACCGAGAAGTGATGCA GCCAGAGGTTGTTAGCCGGAAACAGAAGACGGTCGGGGTTGTGGAAGGTTGTCTGTGCGTGATGTATCATCGCAGCGGAGAGTACTCGGATTTGTGGGTG ATGAAAGAGCTTGGAGTGGTGGAGTCATGGACTAAGTTGTTCAGAATTGATATGCGGCGGGATGATGATGAGCTTCGTCGGCTGGAGTATTTCACGCCGG TTCATGTCTCCGGCGGGAAAGCTCTGTTGTGGTTGTGGTCTAGCATTGCTGTGTATAGTTATGAGGATGAATCTGTAGTGTACTCGTCGGACGATGTTTG GTCCTGTCAGGTTTACATCGAGAGCTTGGTTTCTCCTGGATTGGAAATCCAGTAA
AA sequence Show only first row Show all	>Lus10008871 pacid=23144217 polypeptide=Lus10008871 locus=Lus10008871.g ID=Lus10008871.BGIv1.0 annot-version=v1.0 MPKLRPGIAGDDEAASTGEPHQLRPSSATVLPPDYITEILTRLPVKPLLRFKSVSKSFKSLIPGRDFIKHHLNRLKSSKNPLLLISPASKLGYSSCTLES LYQIPPPHPSFTDLDHAPTLIEPHSKPYWLVGSCDGLICVAVKHRSVVLWNPSTRAFSTLPPQLDDDGELGRRSRYSVFGFGYDSLTDDYKVVSISCYPN KDAPLATVQLCSVKSKVWKRIEDFKYGIPCNSPGKYVSNTLNWVMDNESSSIVSLDLHSETYREVMQPEVVSRKQKTVGVVEGCLCVMYHRSGEYSDLWV MKELGVVESWTKLFRIDMRRDDDELRRLEYFTPVHVSGGKALLWLWSSIAVYSYEDESVVYSSDDVWSCQVYIESLVSPGLEIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10008871 [exp]	0	1
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10000230 [exp]	2.0	0.7946
					Lus10008157 [exp]	2.8	0.7846
AT5G07610			F-box family protein (.1)		Lus10014320 [exp]	3.2	0.7158
AT3G18030		ATHAL3A	HALOTOLERANCE DETERMINANT 3, A...		Lus10014795 [exp]	7.1	0.6663
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10043208 [exp]	8.7	0.7534
AT3G05640			Protein phosphatase 2C family ...		Lus10020671 [exp]	12.0	0.7234
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10020707 [exp]	13.0	0.6474
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10013653 [exp]	14.5	0.6769
AT4G36680			Tetratricopeptide repeat (TPR)...		Lus10041727 [exp]	14.5	0.6701
AT5G24320			Transducin/WD40 repeat-like su...		Lus10022377 [exp]	18.8	0.6680

Compare expression of checked genes

Lus10008871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.