Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41940 533 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT3G49350 525 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G24390 493 / 1e-170 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G53570 430 / 8e-146 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G52580 137 / 4e-34 RabGAP/TBC domain-containing protein (.1.2) AT4G28550 124 / 6e-31 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G27100 124 / 1e-30 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G54780 122 / 3e-30 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT3G59570 125 / 5e-30 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G43490 124 / 9e-30 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023237 [exp] 872 / 0 AT5G41940 571 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10022356 [exp] 654 / 0 AT3G49350 650 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10033232 [exp] 532 / 0 AT5G41940 590 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008839 [exp] 386 / 2e-129 AT3G49350 382 / 3e-128 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10027697 [exp] 136 / 9e-36 AT5G52580 526 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10039968 [exp] 139 / 8e-35 AT5G52580 867 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10038091 [exp] 137 / 4e-34 AT5G52580 938 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10006646 [exp] 134 / 4e-33 AT5G52580 939 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10004802 [exp] 132 / 1e-32 AT2G43490 499 / 2e-170 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G007400 [exp] 629 / 0 AT5G41940 596 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.012G024500 [exp] 604 / 0 AT3G49350 601 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.003G146300 [exp] 466 / 3e-159 AT5G41940 624 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G084300 [exp] 459 / 8e-157 AT5G41940 603 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G419100 [exp] 134 / 4e-34 AT5G54780 663 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.018G127500 [exp] 135 / 8e-34 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.006G066300 [exp] 135 / 1e-33 AT5G52580 925 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.011G135300 [exp] 130 / 1e-32 AT4G27100 667 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.007G132900 [exp] 128 / 3e-31 AT2G43490 808 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.017G023200 [exp] 127 / 1e-30 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10008872 pacid=23144214 polypeptide=Lus10008872 locus=Lus10008872.g ID=Lus10008872.BGIv1.0 annot-version=v1.0 ATGCTCACTCCCATCCCCAACTTCAGCCTCAAAGCATTTCTCCACATCTCCGTCAGCGGCGGGAGTGGAGGCGGTGGCGATCGATCACCCTGGGCACTGG CGGCTCCACACTCTCCTTCATCACCTGCCGTTTTAGCCGTCACTGCCTTGGCCGGAATTGCAGTTGTCGCCGCCATTTTCTACACCACTAAAAGGGGGCG GATTAAATCACCTTGGTCACAACGGAAAAGAAAACATGTCCTTTCTCCTCAAGATTGGAATGAATTATTTACATCTGATGGGAAACTTCGTGATGGCGGA GTCAAGTTTCTGAAGAAAGTTCGCAGCGGAGGCGTTGATCCAAGTATAAGGCCAGAAGTTTGGCCATTTCTGCTTGGAGTCTATGAATTGAACAGTACCG GAGATGAAAGGGAGCTTATTAGAACTGAAAAAAGGAAAGAGTATAATAAACTTCGGAGACAGTGCCAAAGACTCCTTAGGCAAAATAGCGAGACCTCTAA AATTAGCGAAGATGGTGAAATAGTCGAGAGTAGAGATGGAGGAAGTTCCAGAGACTCTTCTAGTGATGAAGAAAAGAGTTCTCCAGTTTCTGTTCATTCA AGTGATCTATGTGCTACAGTTTCAGAAGATGATGATTCTCCTGAAAGGAAAACCAGTAGTTCTGATGGTTCTGGACTAGATTCCGAGTCATCTGAAGATT CTGAAGTGATTCAGGCTACTGCTTCAGACAACACAAAAGAGAACGACGATAATGCTTGTTCTAACGAGAACAGCTCCACACCAGCACCTGCACCTCACTC AAGGCCTCGGGCAGTGGAAGATTTCTCCACGTGGCAGCAAATCATCCGAGTCGATGCGGTACGCGCCAACCCAGAATGGATACCTTACTCCCCAATCCAG GCTTCAGTATCCGAACCCATAGCCGAGCGTTTTGCCGAGAAAGTTGGGCTGAAAGAACACGACCATCTCGATCCCTCCAGAGTTTTCCACGCTGCACGTT TAGTCGCCATTCTAGAAGCCTACGCACTGTACGACTCGGAAATCGGGTACTGCCAGGGAATGAGCGACTTACTCAGCCCGATAATTGCTGTAATGCAAGA AGACCACGAAGCCTTCTGGTGTTTTGTCGGGTTCATGAAGAAAGCCCGACATAACTTCAGGCTCGACGAGGTGGGAATCAGACGCCAGCTGAGTATAGTC TCCAAGATCATCAAATTCAAGGACTCGCATCTCTACCAGCATCTCGAGAAGCTGCAAGCGGAAGATTGTTTCTTCGTGTACAGGATGGTCGTCGTACTTT TCAGGAGGGAGTTGAGCTTCGAGCAGACGCTTTGCATGTGGGAGGTTATGTGGGCGGATCAGGCGGCCGTACGAGCTGGGATTGGGAAATCCCGGCATGT CCCGCCACCGAGCGATGACCTTCTGCTATACGCTATAGCGGCTTCAGTGCTGCAGAAGAGGAAACTGATAATAGAGAAGTATAGCAGCATGGATGAGATT TTAAGGGAGTGCAATGGCATGGCTGGGCAGCTTGATGTTTGGAAGCTCTTGGATGATGCTCATAATTTGGTGGTTAACTTGCATGACAAGATAGAGTCTT GA
AA sequence Show only first row Show all	>Lus10008872 pacid=23144214 polypeptide=Lus10008872 locus=Lus10008872.g ID=Lus10008872.BGIv1.0 annot-version=v1.0 MLTPIPNFSLKAFLHISVSGGSGGGGDRSPWALAAPHSPSSPAVLAVTALAGIAVVAAIFYTTKRGRIKSPWSQRKRKHVLSPQDWNELFTSDGKLRDGG VKFLKKVRSGGVDPSIRPEVWPFLLGVYELNSTGDERELIRTEKRKEYNKLRRQCQRLLRQNSETSKISEDGEIVESRDGGSSRDSSSDEEKSSPVSVHS SDLCATVSEDDDSPERKTSSSDGSGLDSESSEDSEVIQATASDNTKENDDNACSNENSSTPAPAPHSRPRAVEDFSTWQQIIRVDAVRANPEWIPYSPIQ ASVSEPIAERFAEKVGLKEHDHLDPSRVFHAARLVAILEAYALYDSEIGYCQGMSDLLSPIIAVMQEDHEAFWCFVGFMKKARHNFRLDEVGIRRQLSIV SKIIKFKDSHLYQHLEKLQAEDCFFVYRMVVVLFRRELSFEQTLCMWEVMWADQAAVRAGIGKSRHVPPPSDDLLLYAIAASVLQKRKLIIEKYSSMDEI LRECNGMAGQLDVWKLLDDAHNLVVNLHDKIES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Lus10008872 [exp]	0	1
AT5G59830			unknown protein		Lus10040857 [exp]	2.0	0.7300
AT2G34585			unknown protein		Lus10023307 [exp]	8.5	0.7175
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Lus10030140 [exp]	14.4	0.6935
AT2G40810		ATATG18C	homolog of yeast autophagy 18C...		Lus10003694 [exp]	16.8	0.7058
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10042859 [exp]	31.5	0.6635
AT5G51740			Peptidase family M48 family pr...		Lus10015019 [exp]	37.4	0.6568
AT1G12310			Calcium-binding EF-hand family...		Lus10032205 [exp]	44.0	0.6202
AT3G18940			clast3-related (.1)		Lus10021018 [exp]	50.1	0.5740
AT5G20885			RING/U-box superfamily protein...		Lus10019507 [exp]	51.7	0.6239
AT5G52990			SNARE-like superfamily protein...		Lus10022397 [exp]	54.6	0.6550

Compare expression of checked genes

Lus10008872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.