Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08139 172 / 2e-49 RING/U-box superfamily protein (.1) AT3G02340 134 / 5e-35 RING/U-box superfamily protein (.1) AT5G60820 129 / 4e-33 RING/U-box superfamily protein (.1) AT5G15820 127 / 8e-33 RING/U-box superfamily protein (.1) AT3G19950 112 / 9e-28 RING/U-box superfamily protein (.1) AT2G40830 104 / 9e-25 RHC1A RING-H2 finger C1A (.1.2.3) AT5G01980 105 / 3e-24 RING/U-box superfamily protein (.1) AT5G64920 100 / 2e-23 CIP8 COP1-interacting protein 8 (.1) AT1G55530 98 / 2e-22 RING/U-box superfamily protein (.1) AT2G39720 95 / 5e-21 RHC2A RING-H2 finger C2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023235 [exp] 663 / 0 AT5G08139 194 / 7e-58 RING/U-box superfamily protein (.1) Lus10010179 [exp] 119 / 9e-31 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10031422 [exp] 114 / 3e-28 AT5G64920 210 / 5e-66 COP1-interacting protein 8 (.1) Lus10040278 [exp] 94 / 2e-21 AT5G59550 224 / 2e-71 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10030755 [exp] 94 / 3e-21 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10040783 [exp] 93 / 5e-21 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10004712 [exp] 94 / 7e-21 AT5G59550 294 / 6e-97 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10017383 [exp] 88 / 7e-21 AT3G19950 127 / 8e-37 RING/U-box superfamily protein (.1) Lus10013235 [exp] 92 / 1e-20 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G047900 [exp] 280 / 2e-89 AT5G08139 201 / 3e-60 RING/U-box superfamily protein (.1) Potri.012G065300 [exp] 273 / 1e-86 AT5G08139 178 / 4e-51 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 129 / 9e-34 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 127 / 4e-33 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 119 / 2e-30 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 117 / 1e-29 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.016G141600 [exp] 105 / 6e-25 AT5G01980 226 / 1e-69 RING/U-box superfamily protein (.1) Potri.006G112100 [exp] 105 / 3e-24 AT5G01980 293 / 1e-92 RING/U-box superfamily protein (.1) Potri.001G243300 [exp] 97 / 7e-22 AT3G46620 239 / 8e-76 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G087800 [exp] 95 / 1e-21 AT5G59550 258 / 1e-83 zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10008874 pacid=23144219 polypeptide=Lus10008874 locus=Lus10008874.g ID=Lus10008874.BGIv1.0 annot-version=v1.0 ATGAGTTATAAGACGGTCCCCATGCCGAGAATCGACAACTCGATATTTGACTCACTGAGTCACCTCGGGCAGGAAAGAAATTCTAACAATGACGACGCTC TCTCTGACGCCGACTCCGTTATTCTTAACGGAGGGGCGGATCTGTTGGGTGGGGCGGATCTGTTGGACTGCGAGAATCAAGTGCGTTTCGTTATGGATTT AATTCATCAGCGTGTTGATCAGTCTCAGGTAATGGGCCACGATTCCGAGGTGTTTTCCGATGCGTTAAATGAATCTACCTTTGGGGTTATAGATGTGGAT TCTTCTGTCCGGAATTTAGAGCACGATTTAGGTTTAGGGATAGGGTTTGGTTTAGGTACTCACGGGAACTTCGGGTTCCAAGATGTATACCTGAATGACG AAAACAGCAATGTCGGGTATCGTTTCAACGCTCTCATTGACGATATTATTGATGATGTTGATAATGATGTCTTCTTTGTTGAGAGGAGGGTTTCCAGTGC TCATAGAGATGCAGTTCGGATTGCTGGGTTTCTATCGGATACAGAGTCCGACGAGAATGAGGATCCATTAGCTACAGCTTTCCATTCTCGTGTTGAATAT GGATGGGATGATGGACACGTAGAAAGTGGTGGCCATTGTGATTACTGGAGTGGAGAAGATGCCAACGATGATGATGATGCTATTACATTTCCCCTTTGCT GGAATTCACTTCGGTTGGACGATCAGAGGGATCAGAATGATGATTTTGAGTGGGAGGAGATCGATGGCCGTGTCGATGAACGAGAGGTGTTTAGCGTGTT TCTTGATGACGAAGATGATGGTGAGGCCTCCATATCACTCTCACTCTCTCCCATCATTGCTCCTGAAGATATGGTTAGCGTGGACCGAGTCGGAGGACCT GCAGGGAACCTGGAGTGGGAGGTGTTGCTGGATACTGCAACCTTCGGATCATTTCCTGAGCAGGAACAAGATCGGGACTTGGGCGGTCAAGATGACTTCA ACTACACATATGAAACGGTGTTCGGCCAGTTTGCTGAGATGGATACAGTTCTCACAGGTCAGCCTCCTGCTGCAAGATCGGCAGTCGAGAGGCTTCCTTC ACTTGTGCTGGCCAAAGAAGATTTGGGGACTGATAACTCGACATGTGCCGTTTGTAAGGATGATATGAATGTGGGGCAGAAGGCAAAGTTGCTTCCTTGC ACGCACCGGTATCATGAGGATTGCATCGTTCCTTGGCTGAAAATTCGGAACACTTGCCCTGTATGCCGGCATGAATTGCCTACCGATGATGCGGATTACG AGAGGAGGAAGACGGTTAGGCGTCACCTGTGA
AA sequence Show only first row Show all	>Lus10008874 pacid=23144219 polypeptide=Lus10008874 locus=Lus10008874.g ID=Lus10008874.BGIv1.0 annot-version=v1.0 MSYKTVPMPRIDNSIFDSLSHLGQERNSNNDDALSDADSVILNGGADLLGGADLLDCENQVRFVMDLIHQRVDQSQVMGHDSEVFSDALNESTFGVIDVD SSVRNLEHDLGLGIGFGLGTHGNFGFQDVYLNDENSNVGYRFNALIDDIIDDVDNDVFFVERRVSSAHRDAVRIAGFLSDTESDENEDPLATAFHSRVEY GWDDGHVESGGHCDYWSGEDANDDDDAITFPLCWNSLRLDDQRDQNDDFEWEEIDGRVDEREVFSVFLDDEDDGEASISLSLSPIIAPEDMVSVDRVGGP AGNLEWEVLLDTATFGSFPEQEQDRDLGGQDDFNYTYETVFGQFAEMDTVLTGQPPAARSAVERLPSLVLAKEDLGTDNSTCAVCKDDMNVGQKAKLLPC THRYHEDCIVPWLKIRNTCPVCRHELPTDDADYERRKTVRRHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08139			RING/U-box superfamily protein...		Lus10008874 [exp]	0	1
AT5G16450			Ribonuclease E inhibitor RraA/...		Lus10026835 [exp]	6.6	0.7083
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10017488 [exp]	17.3	0.5902
AT3G13410			unknown protein		Lus10009853 [exp]	28.1	0.6676
AT1G69330			RING/U-box superfamily protein...		Lus10026648 [exp]	38.5	0.6273
AT5G24460			unknown protein		Lus10032931 [exp]	41.5	0.6775
AT4G09620			Mitochondrial transcription te...		Lus10009420 [exp]	43.6	0.6758
AT3G32930			unknown protein		Lus10013750 [exp]	50.8	0.6124
AT5G40510			Sucrase/ferredoxin-like family...		Lus10002520 [exp]	51.2	0.6366
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Lus10043440 [exp]	60.7	0.6385
AT2G22170			Lipase/lipooxygenase, PLAT/LH2...		Lus10037491 [exp]	64.6	0.6423

Compare expression of checked genes

Lus10008874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.