Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24430 729 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT3G49370 705 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT2G46700 698 / 0 ATCRK3 CDPK-related kinase 3 (.1.2) AT3G50530 654 / 0 CRK CDPK-related kinase (.1.2) AT2G41140 653 / 0 CRK1, ATCRK1, ATCBK3 CDPK-related kinase 1 (.1) AT3G56760 652 / 0 Protein kinase superfamily protein (.1) AT1G49580 634 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT3G19100 634 / 0 Protein kinase superfamily protein (.1) AT2G17890 452 / 5e-153 CPK16 calcium-dependent protein kinase 16 (.1) AT4G36070 434 / 1e-146 CPK18 calcium-dependent protein kinase 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023234 [exp] 989 / 0 AT5G24430 742 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Lus10002966 [exp] 664 / 0 AT3G50530 1006 / 0.0 CDPK-related kinase (.1.2) Lus10025270 [exp] 642 / 0 AT3G50530 825 / 0.0 CDPK-related kinase (.1.2) Lus10009342 [exp] 498 / 1e-171 AT3G50530 695 / 0.0 CDPK-related kinase (.1.2) Lus10028459 [exp] 442 / 2e-150 AT2G17890 858 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10041914 [exp] 442 / 3e-149 AT2G17890 875 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10038460 [exp] 346 / 3e-112 AT5G12180 916 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10000889 [exp] 343 / 4e-111 AT5G12180 907 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10009078 [exp] 342 / 5e-111 AT2G46700 451 / 2e-153 CDPK-related kinase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G023300 [exp] 841 / 0 AT5G24430 811 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Potri.014G103500 [exp] 760 / 0 AT2G46700 840 / 0.0 CDPK-related kinase 3 (.1.2) Potri.002G176700 [exp] 758 / 0 AT2G46700 835 / 0.0 CDPK-related kinase 3 (.1.2) Potri.005G135900 [exp] 665 / 0 AT3G50530 954 / 0.0 CDPK-related kinase (.1.2) Potri.007G040800 [exp] 659 / 0 AT3G50530 943 / 0.0 CDPK-related kinase (.1.2) Potri.016G035500 [exp] 650 / 0 AT2G41140 965 / 0.0 CDPK-related kinase 1 (.1) Potri.004G143700 [exp] 648 / 0 AT3G50530 843 / 0.0 CDPK-related kinase (.1.2) Potri.006G040500 [exp] 622 / 0 AT2G41140 866 / 0.0 CDPK-related kinase 1 (.1) Potri.009G105700 [exp] 608 / 0 AT3G50530 801 / 0.0 CDPK-related kinase (.1.2) Potri.007G057600 [exp] 443 / 1e-149 AT5G66210 869 / 0.0 calcium-dependent protein kinase 28 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10008875 pacid=23144267 polypeptide=Lus10008875 locus=Lus10008875.g ID=Lus10008875.BGIv1.0 annot-version=v1.0 ATGGGCCAGTGTTGTGCTAAGGAAGTAGCAGGTCTGTCCGATCGGCTTCCACAATCCTCCTCCTCCTTCAATAACGACGCTGCCGGATGCCGGAACCACG CCAACGCCAAGACTCCTGCATCGCCGGCCGCAACCACTCCCGTCTCCGGCCACTCCTCCTCCAATCACGCGAATGTCTACGCTGCTAGTCCCTTCCACAG CCCCTTGCCGGCGGGAGTTCCGCCGTCGCCTTCCCCCTCCGGGACTCCAGGTAGGAAGTTCAAATGGCCACTGCCGCCTCCTTCTCCGGCGAAGCCGATC ATGCGGATGCTGCGGAAGAAGGGACCGACTAAGAAGACTCCCAAGCAAGGTCCGATTCCTGAACACGAGGAAGGCGGAGGCGGCGGCGGCGGTGGAGATG AGAGCGAGGTACCGCTCGATAAGAATTTCGGTTACCCGAAGAACATTGCGGCCAAGTATGAACTAGGGAAAGAGGTCGGCAGAGGGCATTTCGGTCATAC TTGCTGGGCTAAGGGCAAGAAAGGCGATCTCAAGGGCGAATCCGTCGCAGTCAAGGTCATTTCCAAGGCCAAGATGACAACAGCAATTGCGATTGAGGAC GTCCGCCGGGAGGTTAAGATATTGAAGTCATTATGCGGCCATAAGCACATGATAAGATTTCATGATGCGTTTGAGGATGCCAACAATGTCTATATTGTTA TGGAATTATGTGAAGGTGGAGAACTTCTTGATAGAATTTTATCAAGGGGTGGGAGGTACACTGAGGATGACGCAAAAGCCATTGTTATTCAAATTCTAGG TGTGGTTTCTTACTGTCATCTTCAAGGTGTTGTACATCGTGATTTAAAGCCTGAGAATTTTCTGTTCACTACTAAAGACGAGGATGCGCCAATGAAGATG ATCGATTTTGGCCTTTCTGATTACGTTAGACCGGAACAACGTCTTAATGATATTGTTGGCAGTGCATACTATGTTGCACCTGAAGTGCTCCACCGATCCT ACAGCGTTGAGGCAGATATGTGGAGTATTGGCGTGATAACTTACATCCTTTTATGTGGAAGCAGACCTTTCTGGGCACGCACTGAATCGGGAATTTTTCG GTCCGTCTTGAGAGCTGATCCCAACTTCAACGACTCGCCGTGGCCCTCAGTAACACCAGAAGCTAAGGATTTCGTAAAAAGACTTCTCAACAAGGACCAC AGAAAAAGAATGACTGCTGCCCAGGCTCTTTCTCATCCATGGATAAGAAATGTAGTCCCAGAGGTGCCTTTGGATATCTTTATATTCAAGACTGTAAAGT CATATGTTCGTGCCACACCCTTCAGACGTGCTGCATTGAAGTCTCTCTCGAAAGCTATTCCGGAGGACGAACTTGTCTATCTGAAGACTCAGTTTGAGCT CTTAGAACCCAAAGATGGTCATTTGTCCCTTAACAATTTCAGAGTGGCGTTAAACCGAAATGTCACTGATGCGATGAAAGAATCAAGAGTTCTTGATATC CTACACATGCTCGAACCACTCTCTTACAAGAAAATGGGGTTTGAGGAATTCTGCGCGGCGTCTATAAGTACATATCAGCTTGAAGCCCTTGAAGGGTGGG AGAAGATAGCTAAAACAGCATTCGATCATTTCGAACAAGAAGGAAACCGAGTCATATCGGTGCAGGAACTGGCACTAGAAATGAATTTGGGGCCGGCAGC TCATTCCTTGCTGGCAGACTGCATCAGAAGTTCGGACGGGAGGTTGAGTTTCCTCGGATATACGAAATTTTTACGCGGCGTAACGATACGCAGCACCAAT ACTACAAGAACCAGATAG
AA sequence Show only first row Show all	>Lus10008875 pacid=23144267 polypeptide=Lus10008875 locus=Lus10008875.g ID=Lus10008875.BGIv1.0 annot-version=v1.0 MGQCCAKEVAGLSDRLPQSSSSFNNDAAGCRNHANAKTPASPAATTPVSGHSSSNHANVYAASPFHSPLPAGVPPSPSPSGTPGRKFKWPLPPPSPAKPI MRMLRKKGPTKKTPKQGPIPEHEEGGGGGGGGDESEVPLDKNFGYPKNIAAKYELGKEVGRGHFGHTCWAKGKKGDLKGESVAVKVISKAKMTTAIAIED VRREVKILKSLCGHKHMIRFHDAFEDANNVYIVMELCEGGELLDRILSRGGRYTEDDAKAIVIQILGVVSYCHLQGVVHRDLKPENFLFTTKDEDAPMKM IDFGLSDYVRPEQRLNDIVGSAYYVAPEVLHRSYSVEADMWSIGVITYILLCGSRPFWARTESGIFRSVLRADPNFNDSPWPSVTPEAKDFVKRLLNKDH RKRMTAAQALSHPWIRNVVPEVPLDIFIFKTVKSYVRATPFRRAALKSLSKAIPEDELVYLKTQFELLEPKDGHLSLNNFRVALNRNVTDAMKESRVLDI LHMLEPLSYKKMGFEEFCAASISTYQLEALEGWEKIAKTAFDHFEQEGNRVISVQELALEMNLGPAAHSLLADCIRSSDGRLSFLGYTKFLRGVTIRSTN TTRTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24430			Calcium-dependent protein kina...		Lus10008875 [exp]	0	1
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Lus10025284 [exp]	2.8	0.8918
AT1G11300			protein serine/threonine kinas...		Lus10039731 [exp]	7.3	0.9193
AT1G78310			VQ motif-containing protein (....		Lus10010348 [exp]	10.4	0.8923
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Lus10016363 [exp]	12.3	0.8419
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10019328 [exp]	13.3	0.8962
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10020798 [exp]	17.0	0.9024
AT5G09310			unknown protein		Lus10037415 [exp]	18.0	0.8844
AT5G58700		ATPLC4	phosphatidylinositol-speciwc p...		Lus10018241 [exp]	20.0	0.8900
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10038122 [exp]	20.2	0.8898
AT1G78310			VQ motif-containing protein (....		Lus10036480 [exp]	22.8	0.8872

Compare expression of checked genes

Lus10008875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.