Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49380 66 / 1e-12 IQD15 IQ-domain 15 (.1) AT1G01110 65 / 4e-12 IQD18 IQ-domain 18 (.1.2) AT4G10640 64 / 9e-12 IQD16 IQ-domain 16 (.1) AT4G00820 59 / 2e-10 IQD17 IQ-domain 17 (.1) AT3G16490 48 / 1e-06 IQD26 IQ-domain 26 (.1) AT1G72670 48 / 1e-06 IQD8 IQ-domain 8 (.1) AT3G49260 47 / 5e-06 IQD21 IQ-domain 21 (.1.2.3) AT1G51960 45 / 9e-06 IQD27 IQ-domain 27 (.1) AT2G26180 45 / 2e-05 IQD6 IQ-domain 6 (.1) AT4G14750 44 / 2e-05 IQD19 IQ-domain 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012608 [exp] 61 / 8e-11 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2) Lus10010104 [exp] 61 / 8e-11 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2) Lus10014870 [exp] 57 / 3e-09 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10013522 [exp] 47 / 3e-06 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10008269 [exp] 47 / 3e-06 AT1G01110 317 / 8e-102 IQ-domain 18 (.1.2) Lus10027435 [exp] 45 / 1e-05 AT5G62070 207 / 3e-62 IQ-domain 23 (.1) Lus10039573 [exp] 44 / 4e-05 AT5G13460 243 / 9e-76 IQ-domain 11 (.1) Lus10005315 [exp] 44 / 4e-05 AT5G13460 235 / 7e-73 IQ-domain 11 (.1) Lus10005760 [exp] 42 / 0.0002 AT5G07240 219 / 3e-67 IQ-domain 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G022500 [exp] 67 / 6e-13 AT1G01110 242 / 2e-73 IQ-domain 18 (.1.2) Potri.002G178500 [exp] 66 / 2e-12 AT4G00820 458 / 1e-156 IQ-domain 17 (.1) Potri.015G005900 [exp] 64 / 1e-11 AT4G00820 277 / 1e-86 IQ-domain 17 (.1) Potri.014G104600 [exp] 61 / 8e-11 AT4G00820 432 / 2e-146 IQ-domain 17 (.1) Potri.011G153400 [exp] 60 / 2e-10 AT4G00820 331 / 3e-107 IQ-domain 17 (.1) Potri.001G448100 [exp] 57 / 2e-09 AT4G00820 288 / 2e-90 IQ-domain 17 (.1) Potri.006G226600 [exp] 54 / 2e-08 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.003G042700 [exp] 52 / 1e-07 AT1G72670 223 / 3e-68 IQ-domain 8 (.1) Potri.018G062001 [exp] 50 / 2e-07 AT2G26180 260 / 2e-85 IQ-domain 6 (.1) Potri.001G021000 [exp] 50 / 3e-07 AT5G13460 345 / 3e-115 IQ-domain 11 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008876 pacid=23144258 polypeptide=Lus10008876 locus=Lus10008876.g ID=Lus10008876.BGIv1.0 annot-version=v1.0 ATGGGGAAAATGGAAGGGAGCTCTTCATCTTCTTGGTTCACTACAGTTAAAAAGGCTTTCTCGTCTCCGGAAAAGCTCGCCGAGACCAAGCAAACAAAAC AAGCAAGAGAGAGAAGAAGATCAAGGAAAAGAAGATGGATGAACAGCTTCACCAGGAAGCATCATAAGCAACCCACTGTGATTTTGCAGCACTGTGGAAA TGGAATCCACGACAGCAAAAACTACAAGAGCAGTGTTGCAACATCATCAAAGGAAAGCCAAGTCCTGGCGGTGGCGATGGCGACCACCGCAGCTGCACAC GTTGCCATCTCCAGCGCTCCGGCGGCAGTGGAAGCTGCTCGGCTCGCCAACAACCCTTCCATCTTGTTCAGGAAGCATTTCACGGCCGTGTCCATTCAGA CCTCTTTCAGAGCTTATTTGGCGAGAAGGGCGTTGAGGGCGCTGAAGGGAGTGGTGAAGCTGCAACCACTGGTAAGAGGACAGAATATGAGGAGACGAAC TAAACTTACTCTCCATGGCATTCAGTCGCTTCTGAGAATCCAGGCTCGGGTGCTTAACCAGCAGCGCAACAACCGTCGCTTATCTGTCGAAGAAAGTAGT AGCCGAGCTGCAAACCGCCAGGTCTGA
AA sequence Show only first row Show all	>Lus10008876 pacid=23144258 polypeptide=Lus10008876 locus=Lus10008876.g ID=Lus10008876.BGIv1.0 annot-version=v1.0 MGKMEGSSSSSWFTTVKKAFSSPEKLAETKQTKQARERRRSRKRRWMNSFTRKHHKQPTVILQHCGNGIHDSKNYKSSVATSSKESQVLAVAMATTAAAH VAISSAPAAVEAARLANNPSILFRKHFTAVSIQTSFRAYLARRALRALKGVVKLQPLVRGQNMRRRTKLTLHGIQSLLRIQARVLNQQRNNRRLSVEESS SRAANRQV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10008876 [exp]	0	1
AT1G65890		AAE12	acyl activating enzyme 12 (.1)		Lus10020787 [exp]	1.0	0.8807
					Lus10001089 [exp]	3.2	0.8309
AT3G61670			Protein of unknown function (D...		Lus10003040 [exp]	7.2	0.8474
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10001090 [exp]	8.7	0.8321
					Lus10039387 [exp]	11.1	0.8377
					Lus10028018 [exp]	13.8	0.7157
AT4G19130			Replication factor-A protein 1...		Lus10034737 [exp]	16.1	0.7514
					Lus10021271 [exp]	20.2	0.8091
AT2G46380			Protein of unknown function (D...		Lus10005153 [exp]	21.6	0.8259
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Lus10039386 [exp]	21.8	0.8245

Compare expression of checked genes

Lus10008876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.