Plant FIBer expression Database

Lus10008877 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G38720 172 / 1e-51 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023232
[exp]
314 / 9e-107 AT5G38720 204 / 1e-63 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G108700
[exp]
203 / 7e-64 AT5G38720 178 / 3e-54 unknown protein
Potri.004G106900
[exp]
201 / 4e-63 AT5G38720 187 / 2e-57 unknown protein
PFAM info
Representative CDS sequence
>Lus10008877 pacid=23144227 polypeptide=Lus10008877 locus=Lus10008877.g ID=Lus10008877.BGIv1.0 annot-version=v1.0
ATGCCGGCCAAATTTTTTTACCTCGGCGGCGGGGCCCGGCAGCGGCGTCTTTCCGGCGACAGGGCTCTACGAGCGGCGCCTTTCCGGCGCCAGGGCTCTA
CGCCGGTGAAGCAATGGCGGGGCGGCTATCCGGCTGCGGGTACCGTCGGCGAGGACTACAACAGATTCGAGAGGTTTTCAAAGTGTGTCCCTGTACAGGA
CCTGCTTATATCTAATGACTATTGTTCTTTCGTTATTCCAGCTAACACAAGGACTACAGTGGACAAGGTAAAGAAGAAAAAACGAAAATGTGTGTCGGAT
AACAGTGTCCTGGTTGAAGAGTGTAATCAATCTGATGATGTTCCTCCCAAACAAAGCGGTAAATCTAAAAAATTGTCGACGAAGAAGAAGAAGAGCAAGC
AGGGTGATGCATCAGAACGGGAAAGTACCATGAAAGGACAAACAGAAAAAAGTGAAGAGGAGGAGGTTTATTGCTTATCATCAGGAGATGAAGACTGCAC
AAAAGGAGTGAAAAAATGGCTTACAGAATACCACCAAAGTAGACCAGGTTTGAAGGTGTTGCAACAAAGAATAGACGAGTTCATGATCTCTCATGAAGAA
AAGCTCGAGCAGGAAAAGAAAGAGAAAGAAGCTCTGGCTGCAGAAGGTGGATGGACAGTCGTCGGACACCAAAGAGGAAGGAAAAAGACGACAGATCCCG
AAAGCGGGATCGCGGTGGGCTCTGCTGTTCCAGTGGCTAATGCCGGTGACATCTTAGCGAAAAAGAAACGCAAAGAAGTAGGAGTAGATTTCTATCGGTT
CCAAAAGAGAGAAGCTCATATGAACGAAATTGTGGCACTCCAGAGCAAATTTGAGCAGGACAAGAAGCGGATTCAGCAAATGAGGGCTGCAAGAAAGTTC
CGACCTTGCTGA
AA sequence
>Lus10008877 pacid=23144227 polypeptide=Lus10008877 locus=Lus10008877.g ID=Lus10008877.BGIv1.0 annot-version=v1.0
MPAKFFYLGGGARQRRLSGDRALRAAPFRRQGSTPVKQWRGGYPAAGTVGEDYNRFERFSKCVPVQDLLISNDYCSFVIPANTRTTVDKVKKKKRKCVSD
NSVLVEECNQSDDVPPKQSGKSKKLSTKKKKSKQGDASERESTMKGQTEKSEEEEVYCLSSGDEDCTKGVKKWLTEYHQSRPGLKVLQQRIDEFMISHEE
KLEQEKKEKEALAAEGGWTVVGHQRGRKKTTDPESGIAVGSAVPVANAGDILAKKKRKEVGVDFYRFQKREAHMNEIVALQSKFEQDKKRIQQMRAARKF
RPC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G38720 unknown protein Lus10008877
[exp]
0 1
AT5G55310 TOP1alpha, TOP1... DNA topoisomerase 1 beta (.1) Lus10032572
[exp]
2.8 0.8726
AT4G33100 unknown protein Lus10014752
[exp]
4.5 0.8612
AT1G03760 Prefoldin chaperone subunit fa... Lus10033671
[exp]
4.6 0.8491
AT5G26800 unknown protein Lus10031426
[exp]
6.0 0.8633
AT3G09670 Tudor/PWWP/MBT superfamily pro... Lus10012010
[exp]
6.2 0.8422
AT3G05210 UVR7, ERCC1 UV REPAIR DEFICIENT 7, nucleot... Lus10004462
[exp]
7.7 0.8666
AT1G56290 CwfJ-like family protein (.1) Lus10022209
[exp]
11.3 0.8529
AT3G44680 HDA09, HDA9 histone deacetylase 9 (.1) Lus10020570
[exp]
13.1 0.8724
AT4G36650 ATPBRP plant-specific TFIIB-related p... Lus10041732
[exp]
15.9 0.8458
AT1G17130 Family of unknown function (DU... Lus10005575
[exp]
22.8 0.8635

Lus10008877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.