Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24470 278 / 6e-84 APRR5 pseudo-response regulator 5 (.1) AT2G46790 224 / 1e-65 TL1, APRR9 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) AT5G60100 177 / 2e-48 APRR3 pseudo-response regulator 3 (.1.2.3) AT5G02810 158 / 2e-40 APRR7, PRR7 pseudo-response regulator 7 (.1) AT5G61380 108 / 2e-24 AtTOC1, TOC1, APRR1, ARR1 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) AT2G25180 99 / 2e-21 GARP ARR12 response regulator 12 (.1) AT1G67710 96 / 1e-20 GARP ARR11 response regulator 11 (.1) AT3G16857 96 / 3e-20 GARP ARR1 response regulator 1 (.1.2) AT4G31920 95 / 4e-20 GARP ARR10 response regulator 10 (.1) AT4G16110 95 / 4e-20 GARP ARR2 response regulator 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023230 [exp] 1154 / 0 AT5G24470 300 / 2e-92 pseudo-response regulator 5 (.1) Lus10032934 [exp] 440 / 2e-146 AT5G24470 356 / 2e-114 pseudo-response regulator 5 (.1) Lus10015571 [exp] 427 / 9e-142 AT2G46790 365 / 1e-117 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) Lus10008879 [exp] 370 / 1e-118 AT5G24470 316 / 4e-98 pseudo-response regulator 5 (.1) Lus10023229 [exp] 347 / 4e-112 AT5G24470 270 / 4e-85 pseudo-response regulator 5 (.1) Lus10014018 [exp] 169 / 7e-44 AT5G02810 452 / 6e-148 pseudo-response regulator 7 (.1) Lus10000566 [exp] 115 / 6e-27 AT5G61380 433 / 5e-146 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10021629 [exp] 114 / 3e-26 AT5G61380 326 / 4e-103 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10015720 [exp] 113 / 4e-26 AT5G61380 470 / 3e-160 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002300 [exp] 569 / 0 AT5G24470 301 / 1e-92 pseudo-response regulator 5 (.1) Potri.012G005900 [exp] 563 / 0 AT5G24470 305 / 9e-94 pseudo-response regulator 5 (.1) Potri.014G106000 [exp] 340 / 2e-107 AT5G24470 271 / 3e-81 pseudo-response regulator 5 (.1) Potri.002G179800 [exp] 339 / 6e-107 AT5G24470 269 / 2e-80 pseudo-response regulator 5 (.1) Potri.010G215200 [exp] 182 / 2e-48 AT5G02810 441 / 2e-144 pseudo-response regulator 7 (.1) Potri.008G046200 [exp] 180 / 1e-47 AT5G02810 452 / 1e-148 pseudo-response regulator 7 (.1) Potri.015G061900 [exp] 112 / 1e-25 AT5G61380 474 / 2e-161 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Potri.018G111300 [exp] 105 / 2e-23 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.006G188000 [exp] 103 / 6e-23 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.008G135500 [exp] 100 / 1e-21 AT4G16110 370 / 3e-119 response regulator 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Lus10008878 pacid=23144232 polypeptide=Lus10008878 locus=Lus10008878.g ID=Lus10008878.BGIv1.0 annot-version=v1.0 ATGGGAGACTTGGCGACGAGTTGCAGTATTGGCAGTAGTGGAGCAAAACAAGGAGAATTGCGCAGTAGGATTTATCTTCAGGAGGATAAGCAGCTGAATC GGAATCACAAATCGAAGAGGATGAAGAAGAAGAAGCAGAGGAATAGTGAGGAAGTAATGGAAGAGGATGATGACGGTGGTGGTGGTGGTGAGTCGAGGAG TAACGGTTTGGTGGTGAGATGGGAGAGACTGTTGCCTAGGATGGCGTTTAGGGTTTTGCTGGTTGAAGCTGATGACTCCACCAGACAGATTATCGCCGCA CTCCTCAGGAAATGCAGTTACAGAGTTGCTGCGGTGCCTGATGGATTGAAGGCATGGGAATTACTGAAAGAGAGGCCTCATAATATAGATCTCATTCTGA CAGAAGAGAATTTGCCTTCAATCTCAGGATATGCTCTTCTTACACTAATCATGGAGCATGAGATCTGCAAAAACATTCCTGTCATAATGATGTCCAAGGA GGATTCAATTAGCACAGTTTACAAATGCATGATGAGAGGTGCAGCTGACTACCTTGTTAAACCTATAAGGAGGAATGAACTTAGAAATTTGTGGCAGCAT CAAGCTACAAGAGATAATTTGCCTCAGGATGAAAGTGTTGGCCAAGACAGGACGGAGGGTACTTCTGAAAATAATGCTGCAAGTAATCATTCAACTGACG TTGTAGCTTTTGGTCCGAAGAACAAGGAGTATGTTGAGAAGGAGACTGATGCACAGAGCTCTTGCACAAAGCCAGATGTGGATGCAGAAGTACAAGAAAA TGTGCAGGATTTCTTACAGCCAGCCGGAGATAGATTTTCCTTAAATGACACTACAGAAGTCCAGAGACGTGAGTCTTCCACGAATTCGAAACAGAGGTTG CCTGTCCACGAGAATGAAGCCCATGGTTCAGCCACAGCTAAAGGCGAGGATCTGCATGCAACAACTCTCTACAAGGATATCAGAACGGAACCAGAAAGGC CAAATAGTGATATTAATCATGAGGCGGGCGACAGTAATGGTCCCAATTTTAATAGAGAAGGAATTGATTTCATGGGAGTAGCTGTACTTAAGAAATCGTC TGTGGAGAACATCAAAGGCAACTTTCACTCCTATCCAGACTTGGATCTCTCGTTAAGAAGTTCTCGGTCTGGTGAGCTAGACACTCAACTTACAGAAGGA AGAGATTCGCTCAGGCATTCTACTACCTCGGCTTTTACACGGTATGTCGGAAGGACATTGCAAACACAGTATTATAACGAGAAAGAATTTGGAGCCGATT TAGAAAGAAACATTTCCAATGTCATTGGAAATGCATCTGGCGAGGCTCCTACTCCATCAGCAGGTGTTGTTCACAGGACTATGTCTCTTCCAATTTCTCA AGCCAAGGAATCTGAACCTGGATGTTCCCTGCCACAACAAAGAATATTCACGATCCAAACTCCAGCAAGTGATAAAGCAAGGAATACTGATTCAAACCCT GGCTATAGTTCTATGATACCACCTTTCCTGCCGAGTCCATGCTCAGCAAGCCACCCAGCAGAAGCCCCTTCTCATCTGTCCAACTATGATCGACTTGGTC ATGCCAGTGATTGCTTAAATACAAGCTCGTATAACCAGGAGTGCAAGTTGGAGAATCTCGGGATTGTTTCTCCTTTACCTGATCAAAATACAAGCAACAG CTTGTTCATGGGTGCTGCTGTAAATAGCATTGGCTATGGAAGCAGTAATGGAACTGTCGAGGAAGCTGCTTTTGCAAGAGGCAGCGCAGCTGAGAGCAGC AGAATCGAGGAAGGAGTTTTTGCGCACGTGACAAGTTCTCATCGTTCTATGCTGAGAGAAGCGGCCCTTAACAAATTCCGGTTGAAACGGAAAGAACGAT GCTTCGAGAAGAAGGTTCGGTATGAGAGCAGGAAAAAGCTAGCCGAGCAGCGTCCTAGAGTAAAAGGCCAGTTCGTTCGTCAGGCGCCAGTCGAGGCTGC TCCTGAGTGA
AA sequence Show only first row Show all	>Lus10008878 pacid=23144232 polypeptide=Lus10008878 locus=Lus10008878.g ID=Lus10008878.BGIv1.0 annot-version=v1.0 MGDLATSCSIGSSGAKQGELRSRIYLQEDKQLNRNHKSKRMKKKKQRNSEEVMEEDDDGGGGGESRSNGLVVRWERLLPRMAFRVLLVEADDSTRQIIAA LLRKCSYRVAAVPDGLKAWELLKERPHNIDLILTEENLPSISGYALLTLIMEHEICKNIPVIMMSKEDSISTVYKCMMRGAADYLVKPIRRNELRNLWQH QATRDNLPQDESVGQDRTEGTSENNAASNHSTDVVAFGPKNKEYVEKETDAQSSCTKPDVDAEVQENVQDFLQPAGDRFSLNDTTEVQRRESSTNSKQRL PVHENEAHGSATAKGEDLHATTLYKDIRTEPERPNSDINHEAGDSNGPNFNREGIDFMGVAVLKKSSVENIKGNFHSYPDLDLSLRSSRSGELDTQLTEG RDSLRHSTTSAFTRYVGRTLQTQYYNEKEFGADLERNISNVIGNASGEAPTPSAGVVHRTMSLPISQAKESEPGCSLPQQRIFTIQTPASDKARNTDSNP GYSSMIPPFLPSPCSASHPAEAPSHLSNYDRLGHASDCLNTSSYNQECKLENLGIVSPLPDQNTSNSLFMGAAVNSIGYGSSNGTVEEAAFARGSAAESS RIEEGVFAHVTSSHRSMLREAALNKFRLKRKERCFEKKVRYESRKKLAEQRPRVKGQFVRQAPVEAAPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10008878 [exp]	0	1
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10023230 [exp]	1.0	0.9298
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10030757 [exp]	2.4	0.8479
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10008879 [exp]	2.4	0.8360
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10013237 [exp]	4.5	0.8190
AT5G06440			unknown protein		Lus10029362 [exp]	15.3	0.6803
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10002604 [exp]	16.7	0.7063
AT5G28237			Pyridoxal-5'-phosphate-depende...		Lus10007651 [exp]	20.6	0.7349
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10010605 [exp]	22.6	0.7352
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10023229 [exp]	24.2	0.7296
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Lus10036862 [exp]	28.1	0.7540

Compare expression of checked genes

Lus10008878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.