Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24470 266 / 1e-79 APRR5 pseudo-response regulator 5 (.1) AT2G46790 231 / 2e-68 TL1, APRR9 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) AT5G60100 174 / 3e-47 APRR3 pseudo-response regulator 3 (.1.2.3) AT5G02810 168 / 9e-44 APRR7, PRR7 pseudo-response regulator 7 (.1) AT5G61380 119 / 5e-28 AtTOC1, TOC1, APRR1, ARR1 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) AT2G25180 108 / 2e-24 GARP ARR12 response regulator 12 (.1) AT4G31920 104 / 3e-23 GARP ARR10 response regulator 10 (.1) AT2G01760 102 / 3e-23 GARP ARR14 response regulator 14 (.1) AT1G67710 100 / 6e-22 GARP ARR11 response regulator 11 (.1) AT3G16857 97 / 1e-20 GARP ARR1 response regulator 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023229 [exp] 798 / 0 AT5G24470 270 / 4e-85 pseudo-response regulator 5 (.1) Lus10015571 [exp] 510 / 1e-173 AT2G46790 365 / 1e-117 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) Lus10032934 [exp] 501 / 3e-170 AT5G24470 356 / 2e-114 pseudo-response regulator 5 (.1) Lus10023230 [exp] 377 / 2e-121 AT5G24470 300 / 2e-92 pseudo-response regulator 5 (.1) Lus10008878 [exp] 374 / 2e-120 AT5G24470 296 / 8e-91 pseudo-response regulator 5 (.1) Lus10014018 [exp] 175 / 9e-46 AT5G02810 452 / 6e-148 pseudo-response regulator 7 (.1) Lus10000566 [exp] 132 / 3e-32 AT5G61380 433 / 5e-146 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10021629 [exp] 132 / 5e-32 AT5G61380 326 / 4e-103 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10015720 [exp] 130 / 1e-31 AT5G61380 470 / 3e-160 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002300 [exp] 323 / 1e-100 AT5G24470 301 / 1e-92 pseudo-response regulator 5 (.1) Potri.012G005900 [exp] 312 / 1e-96 AT5G24470 305 / 9e-94 pseudo-response regulator 5 (.1) Potri.002G179800 [exp] 229 / 1e-65 AT5G24470 269 / 2e-80 pseudo-response regulator 5 (.1) Potri.014G106000 [exp] 224 / 7e-64 AT5G24470 271 / 3e-81 pseudo-response regulator 5 (.1) Potri.008G046200 [exp] 181 / 5e-48 AT5G02810 452 / 1e-148 pseudo-response regulator 7 (.1) Potri.010G215200 [exp] 178 / 4e-47 AT5G02810 441 / 2e-144 pseudo-response regulator 7 (.1) Potri.015G061900 [exp] 133 / 1e-32 AT5G61380 474 / 2e-161 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Potri.008G135500 [exp] 110 / 8e-25 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.010G105600 [exp] 105 / 2e-23 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.018G111300 [exp] 105 / 2e-23 AT2G25180 348 / 3e-111 response regulator 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Lus10008879 pacid=23144242 polypeptide=Lus10008879 locus=Lus10008879.g ID=Lus10008879.BGIv1.0 annot-version=v1.0 ATGGCGAGTTGGAATGAGATGAACGAGGGGAGTGATAGATCGGATGATTCAGCGACTAGTACTGGCTGCACCGGCGGCGAAGAAGCGGAAGAAGAGCTGA AGCAGAGTAACACTGAAGACATGGAAAGAAGCTGCAATGAAGAGGTAAATCGGAGCAAGTGTTATACAGTGAGCTGGGAGAAATTGTTGCCTAAGATGAT GCTGAGAGTTTTGCTGGTTGAGTCTGATGTTTCCACCAGACAGATCGTTGCCGCTCTTCTCAGGAAATGTAGTTACAGAGTTGTTGCAGCTTCGAATGGT TTGAAAGCGTGGGAGATACTGAAAGAAAGGGGCCATGAGATAGACCTTATTTTGACGGAAGTGGATCTGCCTTCTATATCCGGATACGCTCTTCTCTCGC TGATCATGGAGCATGAGATATGCAAAAACATTCCTGTAATAATGATGTCCAATCAGGAAGCGGTCAGCACGGTTTACAAATGCATGTTAAGAGGTGCCTG TGACTACCTTATTAAGCCTATAAGAAGAAATGAACTCAGAAATTTGTGGCAGCATGTCTGGAGAAAGCATTCTTTGCTTGCAAAAGGAGCAGGCCTTCTG GATAAATATATTGTCCAAGATAAGGTGGAGCCTGCTTGTGTTGATGATGGATATTTTTCTCAGAGAAAGAACGAGTATTTTGAGAATGGCAGTGATAAAC AGAGATCCTGCATGGTTGTCGATGTCGATGCTGTGGGTTCACAAAATGTGAAGAAGCATCAGATCTCCACTCAGAATTTGCTGGTCCAGGACAATCAAGC GAGAGCACCTACTTCTAAGGATGGTACTGCAATCACTCTAGACAACGTCGATAAAAATGCAGATTTGGCTACTAGGGATTGCTCTAGTGAAAGTGCAAAT TTTACCGGCGAAGAGATTGATTTCATGGGAGCAGCTCCACCTCACCAATCTCCCACAATGCACATGGAAAGTGAGTTGGACTCTTGTTCAAACTTGGATC TCTCCTTGAGAAGTTATCGTCCTGGTGGGTTTGAGGTTCAAGAACCAGAAGATGGAAACACCCTCAGGCATTCTAGTGCGTCATCCTTCACACGGTATAC TGGCAGGAAACTGTTCTTCCAAAACTCTCCATCTGACCCAGAAGAACATGCTTTTGTTTCGGAGCAAGTGATTTCCAGTATTACCGATACCGCTGTTCCT GATGTTCAAGTCAAAGAATGTGAAAATGAAAATGCATTTGATGAACAGAACGTGGTTTGTACCCCACGACCAGAAAGTCCATGTTCAGAAAACCGCCCGG AAACATCTGTTAAAGCGAGTGATTCGAACAATGAAACATTGCAAAATGGGGAGAAGAGGTTTGAGTCTTGGAAGGATCAGGGGCATAGTACTAACAGCTC GGGGCATGGAAGCACTTGTGGTAGTAATAGTGATGTGGAACAAGTGACCATGATCAAGGCTGAAGCTGCAGAGAGCAACAATGTTAGAGGAGCTTTCACA CATATCAAAACATCTGCGAGATCCGAGCAAAGAGAGGCTGCTGTAGCCAGATTTCGGCTCAAACGTAAAGAAAGATGCTACGACAAAAAGGTTCGATACG AGAGTAGGAGAATGCTGGCGGAGAAGCGTCCCAGAGTGAAAGGACAGTTTGTTTGCGAATTGGATTGGGAGTCAATTCGAGTACTAGTTCGAGTATATGG GTCGTTACTAGACTCAATAAGGCAAACATGTATCTTGCGTCGAATAACCGTATACAATATATCTTACGTAACTGTTGATTGTGCTAAAGAAAACCCAAGT GATAGGTTGTTTAAGGGTGTGGACGGCGCCGGCGAGGACAGCGGTTTATTTATTTTTAGCTATCTTACCTCGGCGGCGGCGAAGCTGACAGCGGTGGGTG CAGCGGAGGAAGGGAACGGCGACGGTACAGCGGCGGATGGGAATGGCGGCGGGCCAGATCTAACGTCAGTGGGAGCAACGGACGGCGGCGGTGGCGGATC CGACGTCCGCAGAGCAGTAGAGGAAGGGAGCGGCGGCGGCGGATTTGGATAA
AA sequence Show only first row Show all	>Lus10008879 pacid=23144242 polypeptide=Lus10008879 locus=Lus10008879.g ID=Lus10008879.BGIv1.0 annot-version=v1.0 MASWNEMNEGSDRSDDSATSTGCTGGEEAEEELKQSNTEDMERSCNEEVNRSKCYTVSWEKLLPKMMLRVLLVESDVSTRQIVAALLRKCSYRVVAASNG LKAWEILKERGHEIDLILTEVDLPSISGYALLSLIMEHEICKNIPVIMMSNQEAVSTVYKCMLRGACDYLIKPIRRNELRNLWQHVWRKHSLLAKGAGLL DKYIVQDKVEPACVDDGYFSQRKNEYFENGSDKQRSCMVVDVDAVGSQNVKKHQISTQNLLVQDNQARAPTSKDGTAITLDNVDKNADLATRDCSSESAN FTGEEIDFMGAAPPHQSPTMHMESELDSCSNLDLSLRSYRPGGFEVQEPEDGNTLRHSSASSFTRYTGRKLFFQNSPSDPEEHAFVSEQVISSITDTAVP DVQVKECENENAFDEQNVVCTPRPESPCSENRPETSVKASDSNNETLQNGEKRFESWKDQGHSTNSSGHGSTCGSNSDVEQVTMIKAEAAESNNVRGAFT HIKTSARSEQREAAVARFRLKRKERCYDKKVRYESRRMLAEKRPRVKGQFVCELDWESIRVLVRVYGSLLDSIRQTCILRRITVYNISYVTVDCAKENPS DRLFKGVDGAGEDSGLFIFSYLTSAAAKLTAVGAAEEGNGDGTAADGNGGGPDLTSVGATDGGGGGSDVRRAVEEGSGGGGFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10008879 [exp]	0	1
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10023229 [exp]	1.0	0.9088
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10008878 [exp]	2.4	0.8360
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Lus10027196 [exp]	6.5	0.8091
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10023230 [exp]	6.6	0.7845
AT3G14460			LRR and NB-ARC domains-contain...		Lus10005321 [exp]	11.4	0.7527
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Lus10042575 [exp]	13.4	0.7453
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Lus10038912 [exp]	14.1	0.7543
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Lus10038117 [exp]	22.2	0.7247
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10030757 [exp]	23.2	0.7358
AT4G36760		ATAPP1	ARABIDOPSIS THALIANA AMINOPEPT...		Lus10041716 [exp]	24.8	0.7263

Compare expression of checked genes

Lus10008879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.