Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23770 578 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT4G14080 556 / 0 MEE48 maternal effect embryo arrest 48, O-Glycosyl hydrolases family 17 protein (.1) AT3G07320 514 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT2G05790 331 / 5e-109 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 326 / 2e-107 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 313 / 4e-102 O-Glycosyl hydrolases family 17 protein (.1) AT5G56590 313 / 2e-101 O-Glycosyl hydrolases family 17 protein (.1) AT1G66250 294 / 3e-94 O-Glycosyl hydrolases family 17 protein (.1) AT5G24318 292 / 3e-94 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G13560 293 / 5e-94 O-Glycosyl hydrolases family 17 protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023226 [exp] 900 / 0 AT3G23770 572 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10038211 [exp] 504 / 2e-176 AT3G07320 614 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10025892 [exp] 427 / 2e-147 AT3G07320 545 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10032562 [exp] 342 / 2e-113 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004391 [exp] 332 / 2e-109 AT5G55180 602 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10018306 [exp] 331 / 6e-109 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040600 [exp] 319 / 2e-104 AT5G55180 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10015151 [exp] 317 / 2e-103 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004044 [exp] 301 / 4e-97 AT1G66250 752 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G321900 [exp] 640 / 0 AT3G23770 620 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.017G060300 [exp] 627 / 0 AT3G23770 599 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G247900 [exp] 550 / 0 AT3G07320 653 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G247800 [exp] 503 / 1e-176 AT3G07320 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G224600 [exp] 323 / 4e-106 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G158400 [exp] 321 / 5e-105 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G094400 [exp] 313 / 3e-102 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.018G068600 [exp] 309 / 4e-100 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G086400 [exp] 309 / 5e-100 AT1G66250 741 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.017G130200 [exp] 306 / 8e-99 AT1G66250 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10008881 pacid=23144220 polypeptide=Lus10008881 locus=Lus10008881.g ID=Lus10008881.BGIv1.0 annot-version=v1.0 ATGGCCACTGCAACAACAACCTATTCTTTTTTGCTCCCTCTTCTTGCCCTTTCAGCTTTGGTGATGGGCATGGATGTTCCGAACATTGGCATCAACTATG GTCGGCTGGGGAACGACTTGCCGACCCCTTTTAGATCCATCGAGCTAATCAAGTCGATGCAGGTCAGTAGCGTCAAGCTCTATGACCCCAACCCGGAGAT CCTCAAACTGTTGGCAGGAACCAAGATTCAGGTCTCGGTTACGGTCCCGAACCAAGAGATCATCGGTATCTCGCAGAACCGAAGCCTGGCTGTGAAATGG GTTCAGGATAATGTCCTTGCCTACTACCCGGGGACCATGATCCGGTTCGTTCTGGTAGGGAATGAGGTTCTGAGCCGTTCTTCCTCGGAGGATGTTCAAA TCTGGATTCACCTCGTTCCGGCAATGTTGAGAATTAAGAACATAATAAAATCGCACAACATCCTCAACATCAAAGTCGGGACCCCTTTGGCCATGGATGT CTTGCAGAACACGTCGCCTCCTTCCAACGCTACGTTCCGGTCCGACGTCTCCCTCACTGTGATGCCGCAGTTACTTAAATTTCTAAACAGCACCAAATCC TTCTTCTTCATCGATGCCTATCCCTACTTCCCCTGGTCGGAAAACCCCACGAGCTCTGCGCTGGATTTCGCGCTGTTTAAATCCAAGTCCAACTACACTG ATCCAGGAAGCGGCCTGGTTTATAACAACCTTTTAGATCAAATGCTCGATTCCCTCTTCTTCGCGATGAACAAGCTCGGATATCCGGACATCCGAGTTTC GATTTCGGAGACCGGCTGGCCCCACGCCGGCGACATTGACCAACCCGGTGCGAACACGAATAACGCGGCAATATATAACCGGAATGTGATTCGAAAAATG ACCGCCAAGCCTCCGATTGGTACGCCTGCAAAGCCTGGAGTGACCATACCGACGTTCATTTTCTCTTTGTACGACGAGAACAGGAAGAACGGCCCCGGGA CAGAGAGGCACTGGGGATTGCTACGACCTGACGGGACGGCAATATACGATATAGACCTGACCGGGAGTCGAACTGATTCAGAGTACAGGGCGTTACCCGA AGGAAGGAATAATATGGCTTACAAGGGGAAAGTATGGTGCGTTGTGGCGAGAGGAGCTGACATGAGGAGCCTGGGACGAGAACTTTCGTACGCTTGTAGC CATGGGAATAAGACATGCGAAGCACTAGAGCCGGGGAAGGAATGCTACGAGCCAGTCTCGCTGATTTGGCATGCCAGCTATGCGTTCAGCTCGTACTGGA CGCAGTTTAGGAGCCAAGGTGCTACCTGCCACTTCAATGGACTTGCAGTTCAGACCACGAGGAATCCTGGTCATGGATCTTGCCATTTCCCTAATGTGAC AGTTTGA
AA sequence Show only first row Show all	>Lus10008881 pacid=23144220 polypeptide=Lus10008881 locus=Lus10008881.g ID=Lus10008881.BGIv1.0 annot-version=v1.0 MATATTTYSFLLPLLALSALVMGMDVPNIGINYGRLGNDLPTPFRSIELIKSMQVSSVKLYDPNPEILKLLAGTKIQVSVTVPNQEIIGISQNRSLAVKW VQDNVLAYYPGTMIRFVLVGNEVLSRSSSEDVQIWIHLVPAMLRIKNIIKSHNILNIKVGTPLAMDVLQNTSPPSNATFRSDVSLTVMPQLLKFLNSTKS FFFIDAYPYFPWSENPTSSALDFALFKSKSNYTDPGSGLVYNNLLDQMLDSLFFAMNKLGYPDIRVSISETGWPHAGDIDQPGANTNNAAIYNRNVIRKM TAKPPIGTPAKPGVTIPTFIFSLYDENRKNGPGTERHWGLLRPDGTAIYDIDLTGSRTDSEYRALPEGRNNMAYKGKVWCVVARGADMRSLGRELSYACS HGNKTCEALEPGKECYEPVSLIWHASYAFSSYWTQFRSQGATCHFNGLAVQTTRNPGHGSCHFPNVTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23770			O-Glycosyl hydrolases family 1...		Lus10008881 [exp]	0	1
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10025732 [exp]	2.8	0.9548
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10012582 [exp]	8.4	0.9354
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10035479 [exp]	10.5	0.9486
AT2G43900			Endonuclease/exonuclease/phosp...		Lus10008330 [exp]	10.5	0.8992
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10014086 [exp]	10.6	0.9270
AT1G16670			Protein kinase superfamily pro...		Lus10023510 [exp]	11.0	0.9370
AT2G31945			unknown protein		Lus10013740 [exp]	12.2	0.9421
AT3G25610			ATPase E1-E2 type family prote...		Lus10034404 [exp]	12.8	0.9460
AT4G37710			VQ motif-containing protein (....		Lus10011555 [exp]	14.4	0.9292
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10035480 [exp]	15.0	0.9482

Compare expression of checked genes

Lus10008881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.