Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18790 387 / 3e-136 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023225 [exp] 347 / 8e-121 AT3G18790 305 / 3e-104 unknown protein Lus10008883 [exp] 187 / 8e-60 AT3G18790 152 / 2e-46 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G060200 [exp] 388 / 2e-136 AT3G18790 387 / 4e-136 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06246 [flax] [poplar] Isy1 Isy1-like splicing family
Representative CDS sequence Show only first row Show all	>Lus10008882 pacid=23144229 polypeptide=Lus10008882 locus=Lus10008882.g ID=Lus10008882.BGIv1.0 annot-version=v1.0 ATGGCGCGTAATGAAGAGAAAGCGCAGTCTATGTTGAATCGCTACGTAACAGCGCAGGAGCAGGAGAAGAAGAAGCCCAGGGAGCGCCGTCCTTTCCTAG CTTCCGAATGCCGGGACCTCGCCGACGCTGACAAGTGGCGCCAGCAGATCATGAGGGAGATCGGTCGGAAGGTGGCCGAGATCCAGAACGAAGGCCTCGG GGAGCATCTCCTCCGCGATCTCAACGACGAGATCAATAAGCTCATACGGGAGAAGTCTCACTGGGAGCGGCGTATCGTCGAGCTCGGCGGCCATAACTAC ACCAAACACGCCGCTAAGATGACCGACTTGGACGGCAACATAGTCGACGTTCCGAACCCTAGCGGCCGTGGCCCTGGATACCGCTACTTCGGCGCCGCGA AGAAGCTCCCCGGAGTTAGGGAGTTGTTCGAGAAACCGCCGGAGTTGAGGAAGCGGAGGACGAGGTACGACATCTACAAGAGGATCGATTCGAGTTACTA TGGGTATAGAGACGAGGAGGATGGGATTTTGGGGAAAGTTGAGGGCCCTGCTGAGAAAAAGATGAGGTTGGTTGCGGTTGAGGAGTGGAGGAGGATGGAG GAGATTAGGAAGGAAGCGAGGAAAGGAGCGACGGAGGTTGTCACCGTCGGTGTTGTGCCGGCGGCTCAGGAGGTGCTGTTTGAGGAAGAAGAGGATGTGG TGGAAGAGGAGAGGAGGAAGGAGAAGGAGCAGGAAGAGAAGGAGAAACAAAGAGAGTTTGTGGTTCACGTACCTCTCCCGGATGAGAAGGAGATTGAGAA GATGGTGCTGGAGAAGAAGAAGAAGGAGCTCTTGAGTAAATACGCCAGCGACTCATTGGTGGAGGAGCAGTCTGAAGCCAAGTCCATGCTTAACATTAAG CGCTAG
AA sequence Show only first row Show all	>Lus10008882 pacid=23144229 polypeptide=Lus10008882 locus=Lus10008882.g ID=Lus10008882.BGIv1.0 annot-version=v1.0 MARNEEKAQSMLNRYVTAQEQEKKKPRERRPFLASECRDLADADKWRQQIMREIGRKVAEIQNEGLGEHLLRDLNDEINKLIREKSHWERRIVELGGHNY TKHAAKMTDLDGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDSSYYGYRDEEDGILGKVEGPAEKKMRLVAVEEWRRME EIRKEARKGATEVVTVGVVPAAQEVLFEEEEDVVEEERRKEKEQEEKEKQREFVVHVPLPDEKEIEKMVLEKKKKELLSKYASDSLVEEQSEAKSMLNIK R

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18790			unknown protein		Lus10008882 [exp]	0	1
AT4G26670			Mitochondrial import inner mem...		Lus10032577 [exp]	7.3	0.7060
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10039011 [exp]	9.6	0.6730
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030869 [exp]	20.5	0.6748
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035215 [exp]	33.6	0.6665
AT4G19190			zinc knuckle (CCHC-type) famil...		Lus10035690 [exp]	38.5	0.6546
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10005506 [exp]	39.7	0.6491
AT1G27050	HD	ATHB54	homeobox protein 54 (.1)		Lus10036708 [exp]	44.3	0.6489
AT5G49420	MADS		MADS-box transcription factor ...		Lus10011456 [exp]	48.5	0.6485
AT5G44170			S-adenosyl-L-methionine-depend...		Lus10018640 [exp]	50.3	0.6354
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011981 [exp]	57.9	0.6063

Compare expression of checked genes

Lus10008882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.