Plant FIBer expression Database

Lus10008883 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G18790 152 / 3e-46 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023225
[exp]
187 / 2e-60 AT3G18790 305 / 3e-104 unknown protein
Lus10008882
[exp]
187 / 4e-60 AT3G18790 435 / 5e-155 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G060200
[exp]
149 / 3e-45 AT3G18790 387 / 4e-136 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06246 Isy1 Isy1-like splicing family
Representative CDS sequence
>Lus10008883 pacid=23144241 polypeptide=Lus10008883 locus=Lus10008883.g ID=Lus10008883.BGIv1.0 annot-version=v1.0
ATGGCTAGTAATCAAGAGAAAGCGCAGGCTATGTTGAATCGATTCGTAACAGCAAAGGACCAGGAGAAGAAGAAGCCCAGGGAGCGCCGTCCTTTCCTAG
CTTCCAAATGCCTGGCGCGTAATCAAGAGAAAGCGCAGTCTATGTTGAATCGCTACGTAACAGCAAAGGATCAGGAGAAGATTAAGCCCAGGGACCGCCG
TCCTTTCCTAGCTTCCGAATGGCGGGACCTTGCTGACGCTGACAATTGGCGCCAGCAGATCATGAGGGAGATCGGCCGGAAGGTGGCGGAGACCCAGAAC
GAAGACCTCGGGGAGCATCTCCTCCGCGATCTCACCGACGAGATCAATAAGCTCATACGGGAGAAGTCTCACTGGGAGCGCCGCATCGTCGAGCTCGGCG
GCCATAACTACACGCCGCTAAGATGA
AA sequence
>Lus10008883 pacid=23144241 polypeptide=Lus10008883 locus=Lus10008883.g ID=Lus10008883.BGIv1.0 annot-version=v1.0
MASNQEKAQAMLNRFVTAKDQEKKKPRERRPFLASKCLARNQEKAQSMLNRYVTAKDQEKIKPRDRRPFLASEWRDLADADNWRQQIMREIGRKVAETQN
EDLGEHLLRDLTDEINKLIREKSHWERRIVELGGHNYTPLR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G18790 unknown protein Lus10008883
[exp]
0 1
AT1G51120 AP2_ERF AP2/B3 transcription factor fa... Lus10026212
[exp]
4.0 0.7382
AT3G14880 unknown protein Lus10013746
[exp]
9.8 0.6720
AT4G19810 ChiC class V chitinase, Glycosyl hy... Lus10000981
[exp]
14.1 0.6616
AT1G58370 ATXYN1, RXF12 ARABIDOPSIS THALIANA XYLANASE ... Lus10020790
[exp]
21.2 0.6034
AT5G54010 UDP-Glycosyltransferase superf... Lus10008453
[exp]
25.6 0.6312
AT2G26390 Serine protease inhibitor (SER... Lus10039336
[exp]
27.6 0.6228
AT3G62770 ATATG18A autophagy 18a, Transducin/WD40... Lus10023022
[exp]
31.5 0.6216
AT3G23280 XBAT35 XB3 ortholog 5 in Arabidopsis ... Lus10003551
[exp]
32.0 0.6109
AT3G24060 Plant self-incompatibility pro... Lus10017719
[exp]
32.9 0.6209
AT3G08710 TRXH9, ATH9 THIOREDOXIN TYPE H 9, thioredo... Lus10030505
[exp]
35.7 0.6182

Lus10008883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.