Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23790 977 / 0 AAE16 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1) AT4G14070 962 / 0 AAE15 acyl-activating enzyme 15 (.1) AT5G27600 221 / 4e-62 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT3G05970 191 / 3e-51 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT2G47240 177 / 6e-47 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT2G04350 172 / 5e-45 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) AT1G64400 168 / 1e-43 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT4G11030 167 / 2e-43 AMP-dependent synthetase and ligase family protein (.1) AT1G49430 166 / 4e-43 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT4G23850 160 / 3e-41 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023224 [exp] 1400 / 0 AT3G23790 905 / 0.0 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1) Lus10004483 [exp] 208 / 2e-57 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10029918 [exp] 207 / 5e-57 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10010530 [exp] 190 / 4e-51 AT5G27600 1095 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10002454 [exp] 184 / 8e-49 AT5G27600 1088 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10032840 [exp] 167 / 2e-43 AT2G47240 961 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10012307 [exp] 167 / 3e-43 AT2G04350 1054 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10032380 [exp] 163 / 1e-41 AT4G23850 1053 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Lus10016083 [exp] 160 / 1e-40 AT2G04350 1057 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G060100 [exp] 1084 / 0 AT3G23790 1024 / 0.0 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1) Potri.001G321800 [exp] 1041 / 0 AT3G23790 1016 / 0.0 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1) Potri.013G021300 [exp] 220 / 9e-62 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.010G090200 [exp] 200 / 9e-55 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.002G192400 [exp] 167 / 1e-43 AT2G47240 950 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.003G139700 [exp] 164 / 1e-42 AT4G23850 1094 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.001G091900 [exp] 163 / 4e-42 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.009G109900 [exp] 160 / 5e-41 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Potri.014G169400 [exp] 157 / 7e-40 AT2G04350 1051 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.005G177500 [exp] 155 / 2e-39 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10008884 pacid=23144268 polypeptide=Lus10008884 locus=Lus10008884.g ID=Lus10008884.BGIv1.0 annot-version=v1.0 ATGGATGTCGTGGGAGTGCTTTCTTCTCGCTGTTCGCCGCTCTCGCCGATGAGAGCAGTTAATAACTTTCCACTTTCAGCCTATGCTTTGAGCTCCTGCG ATCGGAGTTCTCGGATACTGCACTTCTTATCCCCTCTCGCTCTCGAGCTTTCCAGAGTTGCAGGATTCGACTGCAGTTCTATTTCACTTCGCCGATTCCG TGTTCATTGCGAGTTGAAGAAAGAGGAGTCGAAGATAAGGAGATGTTCACCGTTCCTTGAAAAGACGTTGCTGTCAGGATCTGGGTTGGGCTCTGACGAA TGGAGAGCTGTACCTGACATTTGGAGGTCGGCTGCAGAGAAATACGGGGATACAGTTGCACTGGTGGATCCATATCATCATCCGCCAACAAGTATGACTT ATAAAGAGCTGGAGCGCCAAATTCTATACTTTGCAGAAGGATTGAGGATTGTTGGAGTATTGCCACATGAGAAGCTTGCACTTTTTGCTGATAATTCTTG TCGGTGGCTTGTTGCAGACCAAGGCACAATGGCCATGGGAGCCATTAATGTCGTTAGGGGATCAAGGTCAACAAGTGAGGAGCTACTACAGATCTATAAC CACTCTGACAGTATTGCACTAGCTGTTGACAACCCTGAATTATTCAATCGAATCACGGGAGCATTTTGTTCCAAGGCAACAATGAGATTCATCATTGTGC TTTGGGGAGATAAATCAGACCTGAATTTTCCTGGAATAGAGGAGTTGCCGGTTTTTAGCTACCAAGAAATCATTGATTTGGGACAAGAAAGCTACAAAGC GGTTTCTGTTGCCGAAAATACAGGATCTAAGTATATATACGAGACCATTAGTAGTGATGACATTGCTACACTTATGTATACGAGTGGAACCACAGGAAAT CCAAAAGGTGTTATGCTTACGCACAAAAATCTCTTACACCAGATCAACAATTTGTGGGACATTGTACCTGCTTTACCTGGAGATAGATTTGTAAGCATGC TTCCATCGTGGCATGCATATGAACGAGCTTGTGAGTACTTCATTTTTACGTGCGGTGTAGAGCAAGTTTATACCACCGTGAGAAACTTAAAGGATGATCT GCGGCGTTACCAACCCCATTACATAATATCTGTTCCCTTGGTATTTGAGACACTCTACAGTGGGATACAGAAACAGATTTCTTCGAGCTCTATGGTTCGT AAGGCTATTGCACTTCTGTTCATACGAGTCAGCTTAACTTACATGGAGATGAAGAGAATCTACAAGGGGATGTATCTATCAAAAGAGGAGCGGCAGCCTT CATATCTTGCTGCCATGTTGGATGGGTTATGGGCACGGATGATTGCTGCATTACTGCTCCCATTTCATATGCTGGCTAAGAAGATTGTCTACAGCAAGAT CCACTCCTCTATTGGAATAACCAAGGCTGGCATTAGTGGAGGTGGAAGTTTGCCTTCCTATGTTGACAAGTTTTTTGAGGCAATTGGGATAACGGTACAG AATGGTTATGGAATGACAGAGACAGCTCCAGTCACCGCTGCTCGGCGACGAAACCATAATGTTCTTGGCTCAATTGGACATCCAATTCGTCACACGGAGT TCAAGGTTGTCGATGCTGAGACTGATGAAACTCTACCGGCCGGCACAAAGGGAATTGTAAAGGTCAAGGGTCCGCAGGTGATGAAAGGCTATTACAAGAA TTCATGGGCCACAGAACAAGTCCTGAACAAGGATGGTTGGCTAAACACGGGTGATATAGGTTGGATCGCTCCTCATCATTCAAATGGGCGGAGCAGAAAC AGCGGTGGCATTATCGTCCTTGAAGGCCGTGCAAAAGATACTATAGTTCTTTCAACAGGTGAAAACGTTGAGCCCTTGGAGCTTGAAGAAGCAGCCATGA AGAGCAATCTTATTCAACAAATCGTCATCATCGGTCAGGATCAACGGCGTTTAGGGGCATTGGTTGTTCCAAACAAAGAAGAAGTGTTGGTGGCTGCTAA AACGAAGTCGATTGTTGATAATGATGCCACTGAAGTCAGCAAGGATAAAATGATCAGGTTGCTTGACGAAGAACTCCGTACTAGGACTGCTCAGTGCTCG TTTCAAGTCGGGCCGATTCTTATGGTAGATGAGCCTTTCACGATTGAGAATGGGTTGATGACTCCAACCATGAAAGTTCGAAGGGACAGAGTGGCATCCA AATACCAACACCAAATTTCTCTTCTCTACAGCAACTAA
AA sequence Show only first row Show all	>Lus10008884 pacid=23144268 polypeptide=Lus10008884 locus=Lus10008884.g ID=Lus10008884.BGIv1.0 annot-version=v1.0 MDVVGVLSSRCSPLSPMRAVNNFPLSAYALSSCDRSSRILHFLSPLALELSRVAGFDCSSISLRRFRVHCELKKEESKIRRCSPFLEKTLLSGSGLGSDE WRAVPDIWRSAAEKYGDTVALVDPYHHPPTSMTYKELERQILYFAEGLRIVGVLPHEKLALFADNSCRWLVADQGTMAMGAINVVRGSRSTSEELLQIYN HSDSIALAVDNPELFNRITGAFCSKATMRFIIVLWGDKSDLNFPGIEELPVFSYQEIIDLGQESYKAVSVAENTGSKYIYETISSDDIATLMYTSGTTGN PKGVMLTHKNLLHQINNLWDIVPALPGDRFVSMLPSWHAYERACEYFIFTCGVEQVYTTVRNLKDDLRRYQPHYIISVPLVFETLYSGIQKQISSSSMVR KAIALLFIRVSLTYMEMKRIYKGMYLSKEERQPSYLAAMLDGLWARMIAALLLPFHMLAKKIVYSKIHSSIGITKAGISGGGSLPSYVDKFFEAIGITVQ NGYGMTETAPVTAARRRNHNVLGSIGHPIRHTEFKVVDAETDETLPAGTKGIVKVKGPQVMKGYYKNSWATEQVLNKDGWLNTGDIGWIAPHHSNGRSRN SGGIIVLEGRAKDTIVLSTGENVEPLELEEAAMKSNLIQQIVIIGQDQRRLGALVVPNKEEVLVAAKTKSIVDNDATEVSKDKMIRLLDEELRTRTAQCS FQVGPILMVDEPFTIENGLMTPTMKVRRDRVASKYQHQISLLYSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23790		AAE16	acyl activating enzyme 16, AMP...		Lus10008884 [exp]	0	1
AT4G31210			DNA topoisomerase, type IA, co...		Lus10026991 [exp]	6.0	0.9068
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10033820 [exp]	6.3	0.8689
AT1G21460		SWEET1, AtSWEET...	Nodulin MtN3 family protein (....		Lus10018932 [exp]	12.4	0.8662
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001331 [exp]	13.0	0.8810
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10014278 [exp]	13.3	0.8845
AT5G19420			Regulator of chromosome conden...		Lus10039525 [exp]	16.9	0.8802
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10039844 [exp]	17.5	0.8782
AT5G19420			Regulator of chromosome conden...		Lus10024157 [exp]	18.4	0.8792
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Lus10005521 [exp]	19.3	0.8646
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10010969 [exp]	21.7	0.8662

Compare expression of checked genes

Lus10008884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.