Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14000 294 / 8e-100 Putative methyltransferase family protein (.1) AT2G43320 137 / 7e-38 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023222 [exp] 471 / 1e-169 AT4G14000 335 / 3e-116 Putative methyltransferase family protein (.1) Lus10015953 [exp] 126 / 4e-34 AT2G43320 423 / 2e-149 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028415 [exp] 41 / 0.0004 AT1G63855 248 / 2e-84 Putative methyltransferase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G321100 [exp] 336 / 3e-116 AT4G14000 350 / 8e-122 Putative methyltransferase family protein (.1) Potri.017G031700 [exp] 140 / 2e-39 AT2G43320 527 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.007G127300 [exp] 135 / 4e-37 AT2G43320 536 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G148200 [exp] 42 / 0.0002 AT5G44170 46 / 7e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G153900 [exp] 40 / 0.0007 AT1G73320 347 / 2e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10294 [flax] [poplar] Methyltransf_16 Lysine methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10008886 pacid=23144249 polypeptide=Lus10008886 locus=Lus10008886.g ID=Lus10008886.BGIv1.0 annot-version=v1.0 ATGGCGTTCGTAAACTCGGAATTCAAATTATTCTCATCTGGGAAAGGGTTCGATGAAACTCCTTCATTTCAGCCTCCTCCTCGTCCACTCCCGCCGTCAA TAGAAGTTCTCGCTTCGGAGGCATCTTCAACGGTGAAATGCTCGATGGAGCCGTTGGACATAGATGATGGCCTCACTCTACTTAAGGGGAGGGTCCGTAC TCAAGAGATTATGGGACTGCCCAACTCCGATTTAGTTCCTGGAGTGTATGAAGGGGGACTTAAGCTTTGGGAAGGTTCACTTGACCTTGTTAAAGCCCTC CGCTCCCAGATTCGCAAGGGAGAATTATCATTCAGTGGCAAGAAAGTTTTGGAGCTTGGATGCGGCCATGGCATTCCTGGAATATATGCTTGCCTAGAGG GGGCAATGGCTGTCCATTTCCAGGATTTCAATGTTGAGGTTCTCCGGTGCCTAACCATTCCTAATGCAACTGCCAATTTGTCATCAACCGAGCCCATAGT TGAACCCGAAGTAAGATATTTCGCTGGTGACTGGAGCCAAATCCATCAATGTCTTCCTTACGACTATGATGTTATACTAATGGCCGAGACAATTTATGCT GTCTCTGCTCAACCAAGCCTCTACAAACTTGTCAAGAAGTGCTTGAAACGTCCCGGTGGAGCAGTATACATGTCTGCCAAGAAGTATTATTTCGGAGTTG GCGAATTTTTATTGCGGTGTTGGCGGTGGTCCCCGCCAGTTTCTGTCTATGGTGGAGAAAGATGGTGGGATTTCTATATTGGTGTTGTGGATACAAGCCT AGTGGCAGAAGTTGCTGATGGTTCTTCTAATGTCCGGGAAGTTTGGAAGCTTTCTATGAAGAGTTGA
AA sequence Show only first row Show all	>Lus10008886 pacid=23144249 polypeptide=Lus10008886 locus=Lus10008886.g ID=Lus10008886.BGIv1.0 annot-version=v1.0 MAFVNSEFKLFSSGKGFDETPSFQPPPRPLPPSIEVLASEASSTVKCSMEPLDIDDGLTLLKGRVRTQEIMGLPNSDLVPGVYEGGLKLWEGSLDLVKAL RSQIRKGELSFSGKKVLELGCGHGIPGIYACLEGAMAVHFQDFNVEVLRCLTIPNATANLSSTEPIVEPEVRYFAGDWSQIHQCLPYDYDVILMAETIYA VSAQPSLYKLVKKCLKRPGGAVYMSAKKYYFGVGEFLLRCWRWSPPVSVYGGERWWDFYIGVVDTSLVAEVADGSSNVREVWKLSMKS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14000			Putative methyltransferase fam...		Lus10008886 [exp]	0	1
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10029171 [exp]	1.0	0.7848
AT2G20490		NOP10, EDA27	EMBRYO SAC DEVELOPMENT ARREST ...		Lus10033907 [exp]	7.5	0.7826
AT1G78590		NADK3, ATNADK-3	ARABIDOPSIS THALIANA NADH KINA...		Lus10035645 [exp]	8.4	0.7447
AT5G38890			Nucleic acid-binding, OB-fold-...		Lus10004763 [exp]	12.5	0.7759
AT3G63240			DNAse I-like superfamily prote...		Lus10014684 [exp]	15.0	0.7747
AT3G59650			mitochondrial ribosomal protei...		Lus10006114 [exp]	15.2	0.7652
AT5G13830			FtsJ-like methyltransferase fa...		Lus10023402 [exp]	20.1	0.6972
AT3G52170			DNA binding (.1.2)		Lus10028828 [exp]	25.3	0.7081
AT2G45730			eukaryotic initiation factor 3...		Lus10033150 [exp]	28.0	0.7137
AT5G46920			Intron maturase, type II famil...		Lus10003019 [exp]	28.5	0.7103

Compare expression of checked genes

Lus10008886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.