Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14130 283 / 9e-97 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT3G23730 278 / 7e-95 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT5G57560 239 / 2e-79 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT5G57550 236 / 2e-78 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT4G30270 231 / 1e-76 XTH24, SEN4, BRU1, MERI-5, MERI5B SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) AT4G25810 231 / 1e-76 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT5G48070 225 / 3e-74 XTH20, ATXTH20 xyloglucan endotransglucosylase/hydrolase 20 (.1) AT4G30290 223 / 2e-73 XTH19, ATXTH19 xyloglucan endotransglucosylase/hydrolase 19 (.1) AT5G57530 223 / 4e-73 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT1G65310 222 / 6e-73 XTH17, XTR1, ATXTH17 xyloglucan endotransglucosylase/hydrolase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023221 [exp] 407 / 8e-146 AT3G23730 376 / 4e-132 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10028947 [exp] 288 / 3e-99 AT4G14130 437 / 2e-156 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10008522 [exp] 269 / 3e-91 AT3G23730 430 / 2e-153 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10004723 [exp] 265 / 9e-90 AT3G23730 431 / 1e-153 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10021638 [exp] 258 / 5e-87 AT3G23730 413 / 7e-147 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10000678 [exp] 256 / 4e-86 AT3G23730 410 / 6e-146 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010939 [exp] 250 / 6e-84 AT3G23730 384 / 2e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10031393 [exp] 249 / 1e-83 AT3G23730 388 / 8e-137 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010938 [exp] 247 / 7e-83 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G146100 [exp] 282 / 1e-96 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.002G236200 [exp] 275 / 1e-93 AT3G23730 436 / 1e-155 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.005G201250 [exp] 266 / 2e-90 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201200 [exp] 266 / 3e-90 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060500 [exp] 260 / 7e-88 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060400 [exp] 252 / 9e-85 AT4G14130 402 / 2e-142 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.011G077320 [exp] 252 / 1e-84 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.018G095200 [exp] 248 / 3e-83 AT4G25810 414 / 3e-147 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095100 [exp] 248 / 4e-83 AT4G25810 420 / 1e-149 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.011G077380 [exp] 248 / 5e-83 AT4G14130 345 / 2e-119 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10008888 pacid=23144246 polypeptide=Lus10008888 locus=Lus10008888.g ID=Lus10008888.BGIv1.0 annot-version=v1.0 ATGTACATCTACGACGATCAAAAGTTGTCATCACAAGGGCCAATCCACGACGAAATCGACTTCGAGTTCCTCGGAAACGTCAGCGGGCAGCCTTACACGC TACACACCAACGTGTACACGCACGGACACGGCAACCGAGAGCAACAGTTCTTCCTCTGGTTCGATCCCACTAGAAACTTCCACACTTACTCCATCATCTG GAAGCCCCAACACATCATATTCTTGGTGGACCACATCCCGATAAGGGTGTTCAAGAATCTGAGGAAGTACGGGGTGCCGTTCCCGAGGAAGCAGCCGATG AAGCTCTACTGCAGCCTTTGGGACGCCGACGACTGGGCGACACGTGGCGGGTTGGTCAAGACCGACTGGTCAATGGCGCCTTTCACTTCCTACTTCCGTA ACTTCCAAGCAACTCCGTACACCAACTTCGCCCACAACGGCCGGGGCAAGTTCAGGGAAGCCGGGGACCCGGATCTCGACGCGTACGCGAGGAGACGGCT CCGGTGGGTCGAGAAGTACTTCATGATCTATAACTACTGCACAGATGTCAACCGGTTCCAGGGCCGTCTCCCCCCTGAATGCAAACACTCTAGGGCACTA TGA
AA sequence Show only first row Show all	>Lus10008888 pacid=23144246 polypeptide=Lus10008888 locus=Lus10008888.g ID=Lus10008888.BGIv1.0 annot-version=v1.0 MYIYDDQKLSSQGPIHDEIDFEFLGNVSGQPYTLHTNVYTHGHGNREQQFFLWFDPTRNFHTYSIIWKPQHIIFLVDHIPIRVFKNLRKYGVPFPRKQPM KLYCSLWDADDWATRGGLVKTDWSMAPFTSYFRNFQATPYTNFAHNGRGKFREAGDPDLDAYARRRLRWVEKYFMIYNYCTDVNRFQGRLPPECKHSRAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10008888 [exp]	0	1
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10000008 [exp]	1.7	1.0000
					Lus10001123 [exp]	3.5	1.0000
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10011252 [exp]	3.5	1.0000
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10001022 [exp]	4.2	1.0000
					Lus10023352 [exp]	4.5	1.0000
					Lus10026785 [exp]	4.6	1.0000
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10029384 [exp]	5.2	1.0000
AT3G14040			Pectin lyase-like superfamily ...		Lus10039150 [exp]	6.0	1.0000
					Lus10024677 [exp]	6.2	0.9907
					Lus10028048 [exp]	6.3	1.0000

Compare expression of checked genes

Lus10008888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.