Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68630 119 / 6e-35 PLAC8 family protein (.1) AT5G35525 110 / 2e-31 PLAC8 family protein (.1) AT3G18450 110 / 4e-31 PLAC8 family protein (.1) AT1G58320 106 / 3e-30 PLAC8 family protein (.1) AT1G14870 105 / 8e-30 AtPCR2, PCR2 PLANT CADMIUM RESISTANCE 2 (.1) AT3G18470 100 / 1e-27 PLAC8 family protein (.1) AT1G14880 98 / 1e-26 AtPCR1, PCR1 PLANT CADMIUM RESISTANCE 1 (.1) AT1G49030 99 / 3e-26 PLAC8 family protein (.1) AT3G18460 97 / 3e-26 PLAC8 family protein (.1) AT1G68610 84 / 3e-21 PCR11 PLANT CADMIUM RESISTANCE 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009036 [exp] 197 / 6e-66 AT1G68630 122 / 2e-36 PLAC8 family protein (.1) Lus10004063 [exp] 196 / 1e-65 AT1G68630 132 / 2e-40 PLAC8 family protein (.1) Lus10004064 [exp] 174 / 7e-52 AT4G30040 156 / 3e-41 Eukaryotic aspartyl protease family protein (.1) Lus10021696 [exp] 105 / 4e-29 AT1G14870 177 / 5e-57 PLANT CADMIUM RESISTANCE 2 (.1) Lus10034298 [exp] 100 / 3e-27 AT1G14870 160 / 7e-51 PLANT CADMIUM RESISTANCE 2 (.1) Lus10043325 [exp] 95 / 4e-25 AT1G14870 187 / 4e-61 PLANT CADMIUM RESISTANCE 2 (.1) Lus10019478 [exp] 92 / 4e-24 AT1G14870 184 / 7e-60 PLANT CADMIUM RESISTANCE 2 (.1) Lus10005257 [exp] 73 / 1e-16 AT2G40935 228 / 6e-77 PLAC8 family protein (.1.2.3) Lus10041474 [exp] 66 / 2e-14 AT1G14870 112 / 3e-32 PLANT CADMIUM RESISTANCE 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G092200 [exp] 120 / 3e-35 AT1G14870 164 / 2e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.007G042800 [exp] 114 / 9e-33 AT1G14870 152 / 7e-48 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G109100 [exp] 110 / 5e-31 AT1G14870 165 / 1e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132850 [exp] 108 / 3e-30 AT1G14870 184 / 6e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G127800 [exp] 106 / 5e-30 AT1G68630 151 / 1e-47 PLAC8 family protein (.1) Potri.010G108800 [exp] 107 / 8e-30 AT1G14870 179 / 8e-58 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132775 [exp] 106 / 2e-29 AT1G14870 185 / 2e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G127700 [exp] 104 / 9e-29 AT1G68610 174 / 5e-56 PLANT CADMIUM RESISTANCE 11 (.1) Potri.008G132900 [exp] 103 / 1e-28 AT1G14870 189 / 7e-62 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G108900 [exp] 101 / 1e-27 AT1G14870 142 / 4e-43 PLANT CADMIUM RESISTANCE 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10008890 pacid=23144221 polypeptide=Lus10008890 locus=Lus10008890.g ID=Lus10008890.BGIv1.0 annot-version=v1.0 ATGATGAATATTCAACCCAACGTCACCGGCGGCGAGTGGACCACCGGCCTCTGCGGCTGCTGTGATGATACTGACAGCTGCGTCAAAACTATTTGTTGCC CTTGCATTACCTTCGCCCAGAGTGCTTCGACCGTCGACCAAAATCCTACGTCATGCTTCACATCAGGGCTGCTCTGTTGCCTGATGGGAAGCATAGGGCT GAGCTGTTTATACTCCTACCCATACCGCAGCAAGCTAAGAGAACAGTACCGACTCCCAGAGAAGCCTTTCGGGGATTGCTTGTTGCATTGGTGTTGTCAA CCTTTGGCTCTATGCCAGGAGTATCGTGAGCTTAAGAACCTTGGTCTTAACCCTTCCAAAGGATCGGAAGCAGCATCAACAACCATGATGATTGCCCCCG AGGTTGCAACGGGCATGCCTCGTGCTCAACCATGTTGA
AA sequence Show only first row Show all	>Lus10008890 pacid=23144221 polypeptide=Lus10008890 locus=Lus10008890.g ID=Lus10008890.BGIv1.0 annot-version=v1.0 MMNIQPNVTGGEWTTGLCGCCDDTDSCVKTICCPCITFAQSASTVDQNPTSCFTSGLLCCLMGSIGLSCLYSYPYRSKLREQYRLPEKPFGDCLLHWCCQ PLALCQEYRELKNLGLNPSKGSEAASTTMMIAPEVATGMPRAQPC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68630			PLAC8 family protein (.1)		Lus10008890 [exp]	0	1
AT5G59040		COPT3	copper transporter 3 (.1)		Lus10021107 [exp]	2.4	0.8065
AT5G27350		SFP1	Major facilitator superfamily ...		Lus10035355 [exp]	2.6	0.8362
AT4G05030			Copper transport protein famil...		Lus10039093 [exp]	3.9	0.7901
AT4G15417		ATRTL1	RNAse II-like 1 (.1)		Lus10000182 [exp]	8.0	0.7857
					Lus10024749 [exp]	9.0	0.7073
AT4G15417		ATRTL1	RNAse II-like 1 (.1)		Lus10015141 [exp]	9.2	0.7756
AT5G53040		GRD, RKD4	RWP-RK domain-containing 4, GR...		Lus10005921 [exp]	11.5	0.7676
AT1G11920			Pectin lyase-like superfamily ...		Lus10018430 [exp]	12.1	0.7661
AT5G05340			Peroxidase superfamily protein...		Lus10009936 [exp]	12.4	0.7508
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Lus10036880 [exp]	14.1	0.7355

Compare expression of checked genes

Lus10008890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.