Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28050 327 / 2e-113 TET7 tetraspanin7 (.1) AT2G23810 326 / 7e-113 TET8 tetraspanin8 (.1) AT4G30430 282 / 2e-95 TET9 tetraspanin9 (.1) AT3G45600 233 / 4e-76 TET3 tetraspanin3 (.1) AT5G60220 207 / 1e-65 TET4 tetraspanin4 (.1) AT1G18520 199 / 3e-63 TET11 tetraspanin11 (.1) AT2G19580 194 / 3e-61 TET2 tetraspanin2 (.1) AT3G12090 194 / 4e-61 TET6 tetraspanin6 (.1) AT5G46700 193 / 8e-61 TRN2, TET1 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) AT1G63260 186 / 6e-58 TET10 tetraspanin10 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023216 [exp] 478 / 4e-173 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10019965 [exp] 428 / 4e-153 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10015494 [exp] 416 / 2e-148 AT2G23810 370 / 2e-130 tetraspanin8 (.1) Lus10038473 [exp] 253 / 5e-84 AT3G45600 446 / 9e-160 tetraspanin3 (.1) Lus10008563 [exp] 232 / 7e-76 AT2G19580 411 / 1e-146 tetraspanin2 (.1) Lus10017336 [exp] 221 / 2e-71 AT5G46700 389 / 5e-138 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10001668 [exp] 213 / 1e-68 AT5G46700 384 / 8e-136 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10023338 [exp] 192 / 6e-61 AT3G45600 347 / 1e-121 tetraspanin3 (.1) Lus10038964 [exp] 186 / 2e-57 AT4G28050 203 / 2e-64 tetraspanin7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G099800 [exp] 385 / 5e-136 AT2G23810 322 / 3e-111 tetraspanin8 (.1) Potri.006G177900 [exp] 379 / 5e-134 AT2G23810 317 / 4e-109 tetraspanin8 (.1) Potri.009G015100 [exp] 252 / 1e-83 AT3G45600 388 / 7e-137 tetraspanin3 (.1) Potri.006G150400 [exp] 228 / 3e-74 AT2G19580 367 / 5e-129 tetraspanin2 (.1) Potri.003G093000 [exp] 227 / 5e-74 AT5G46700 369 / 4e-130 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.008G041600 [exp] 214 / 1e-68 AT3G12090 397 / 2e-140 tetraspanin6 (.1) Potri.010G220300 [exp] 213 / 2e-68 AT3G12090 399 / 2e-141 tetraspanin6 (.1) Potri.015G055700 [exp] 210 / 3e-67 AT1G18520 196 / 6e-62 tetraspanin11 (.1) Potri.001G141400 [exp] 208 / 2e-66 AT5G46700 367 / 3e-129 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.001G107200 [exp] 187 / 2e-58 AT1G63260 416 / 1e-148 tetraspanin10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [flax] [poplar] Tetraspannin PF00335 [flax] [poplar] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Lus10008891 pacid=23144239 polypeptide=Lus10008891 locus=Lus10008891.g ID=Lus10008891.BGIv1.0 annot-version=v1.0 ATGTTCCGTCTAAGCAACAACCTGATCGGAATCCTGAACTTCATCACCTTCCTCCTCTCCGTCCCGATCATCTGGGCCGGCGTCTGGCTCCGCAACCACG GCAGCTCCGAATGCGAGAGGTTCCTCGACACTCCGGTCATCGTCCTCGGAGTCTTCCTCATGCTCGTCTCCATCGCCGGACTCGTCGGCGCTTGCTGCAA GAACTCCTGCCTCCTCTGGATCTACCTCGTCGTCATGTTCCTCCTCATCGTCTTGCTATTCTGCTTCACGATCTTCGCGTTCATCGTCACCAATAAGGGA GCCGGGAAGGTCCTGTCCAACCGCGGGTACAAGGAGTATGAGCTCGGCGATTACTCCAATTGGCTTCAGAAGAGAGTGTCTAGCGAGAAGAATTGGAGGA AGATCAGGAGCTGTTTGATTGAGGCGAAAGTCTGCTCCAAGTTCAACCAGAGTTATGTGTCTGATACCGTGGAGCAGTTGTATACAGAGCGATTGTCTGC ACTTCAGTCGGGGTGCTGCAAGCCGTCGGATGAATGTGGATTTACGTACGTGAATCCAACGACATGGACCAATACAGGCACGAAGTCGAGCAACCCTGAC TGTGGAGCTTGGGACAACCGGCCGGATGTTCTGTGCTTCAACTGCAACTCATGCAAGGCCGGTTTGCTCGATAACCTGAAGCGAGATTGGAAGAGAGTGG CGATTGTTAACATCATATTCCTCATTGTGCTCATCGTTGTTTACTCGGTTGGTTGCTGTGCTTTCAGGAACAATAGGAGGGACAACTCTTACTCTTCTGG GTGGAGGAAGGCTTAG
AA sequence Show only first row Show all	>Lus10008891 pacid=23144239 polypeptide=Lus10008891 locus=Lus10008891.g ID=Lus10008891.BGIv1.0 annot-version=v1.0 MFRLSNNLIGILNFITFLLSVPIIWAGVWLRNHGSSECERFLDTPVIVLGVFLMLVSIAGLVGACCKNSCLLWIYLVVMFLLIVLLFCFTIFAFIVTNKG AGKVLSNRGYKEYELGDYSNWLQKRVSSEKNWRKIRSCLIEAKVCSKFNQSYVSDTVEQLYTERLSALQSGCCKPSDECGFTYVNPTTWTNTGTKSSNPD CGAWDNRPDVLCFNCNSCKAGLLDNLKRDWKRVAIVNIIFLIVLIVVYSVGCCAFRNNRRDNSYSSGWRKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23810		TET8	tetraspanin8 (.1)		Lus10008891 [exp]	0	1
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10022358 [exp]	2.0	0.8861
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10028639 [exp]	2.4	0.8989
					Lus10025204 [exp]	3.2	0.9110
AT1G69840			SPFH/Band 7/PHB domain-contain...		Lus10037213 [exp]	3.9	0.8829
					Lus10006638 [exp]	5.4	0.8287
AT2G46080			unknown protein		Lus10005122 [exp]	5.7	0.8865
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10018377 [exp]	5.7	0.8240
AT1G53400			Ubiquitin domain-containing pr...		Lus10007315 [exp]	6.0	0.8607
					Lus10016654 [exp]	6.8	0.8493
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10011879 [exp]	7.1	0.8457

Compare expression of checked genes

Lus10008891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.