Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47960 48 / 7e-07 ATC/VIF1, C/VIF1 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023215 [exp] 276 / 6e-96 AT1G47960 48 / 6e-07 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10002933 [exp] 54 / 4e-09 AT1G47960 89 / 3e-22 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10003530 [exp] 51 / 5e-08 AT1G47960 91 / 5e-23 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10000822 [exp] 43 / 4e-05 AT1G47960 113 / 1e-31 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10017346 [exp] 43 / 4e-05 AT3G17220 79 / 8e-19 pectin methylesterase inhibitor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G083500 [exp] 52 / 2e-08 AT1G47960 114 / 7e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.010G063000 [exp] 52 / 2e-08 AT1G47960 137 / 3e-41 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.006G134900 [exp] 46 / 3e-06 AT5G64620 76 / 2e-17 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.013G012800 [exp] 45 / 5e-06 ND / Potri.013G012766 [exp] 45 / 7e-06 ND / Potri.010G209800 [exp] 43 / 2e-05 AT5G64620 93 / 5e-24 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.001G127500 [exp] 40 / 0.0002 AT4G02250 98 / 3e-26 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10008892 pacid=23144218 polypeptide=Lus10008892 locus=Lus10008892.g ID=Lus10008892.BGIv1.0 annot-version=v1.0 ATGGCTAACTCTTTGTCAATCACTACTCTTATACTATGCCTAGCTATGATCAATCCTTCTTCAGGGTTGCGCCACGTGCCCCAAGACGGAACACTCCTAG ACAAAATATGTCGAGATGGCAAGATCCAACCGTTCTACGACTCATGTGTACAACTATTCACTTCAGACCCTAGAAGTGTGACGGCTGACCTCAAGGGTCT GGTCAGGATCGCGTTGGAGAAGTCGGCACTGACAGTAGCTCGCTCACTGGTGTCCATGGACACCGCGGCCAGGTTAGGGGTGGGGAAAACAAACGACACC GTTCGTGTCAAACTCATGCAGTGCTCCGACCGGTATAGCCAGATCATCTATGACGTCTCCGAAGGGTTTAAGTCGGGGAAAATTGGGGATTTCAATGCCG TGGGGAACAGTGCTCTGGCTATAATCGGACAGACCAACGAATGTCTAGATGGGTTCGTTGGGCCGACAGAGGTTTCGAATGCGACTACTCGGGTGCATAA CCTGGCCGTCATTGTAGCGGTCATTGCTACTTTGTCGACTGGCAGCTCGTAG
AA sequence Show only first row Show all	>Lus10008892 pacid=23144218 polypeptide=Lus10008892 locus=Lus10008892.g ID=Lus10008892.BGIv1.0 annot-version=v1.0 MANSLSITTLILCLAMINPSSGLRHVPQDGTLLDKICRDGKIQPFYDSCVQLFTSDPRSVTADLKGLVRIALEKSALTVARSLVSMDTAARLGVGKTNDT VRVKLMQCSDRYSQIIYDVSEGFKSGKIGDFNAVGNSALAIIGQTNECLDGFVGPTEVSNATTRVHNLAVIVAVIATLSTGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10008892 [exp]	0	1
AT1G29450			SAUR-like auxin-responsive pro...		Lus10023970 [exp]	2.8	0.8131
					Lus10000749 [exp]	7.1	0.8072
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10025619 [exp]	16.1	0.7463
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10040632 [exp]	16.9	0.7463
AT1G18790		AtRKD1, RKD1	RWP-RK domain containing 1, RW...		Lus10019100 [exp]	17.7	0.7463
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10007025 [exp]	23.5	0.7367
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10005010 [exp]	23.9	0.7263
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10019029 [exp]	31.4	0.7734
AT4G21330	bHLH	bHLH022, DYT1	DYSFUNCTIONAL TAPETUM 1, basic...		Lus10007618 [exp]	33.2	0.7174
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10016188 [exp]	47.2	0.6855

Compare expression of checked genes

Lus10008892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.