Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30440 763 / 0 GAE1 UDP-D-glucuronate 4-epimerase 1 (.1) AT1G02000 559 / 0 GAE2 UDP-D-glucuronate 4-epimerase 2 (.1) AT4G00110 556 / 0 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1) AT2G45310 552 / 0 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1) AT3G23820 523 / 0 GAE6 UDP-D-glucuronate 4-epimerase 6 (.1) AT4G12250 515 / 0 GAE5 UDP-D-glucuronate 4-epimerase 5 (.1) AT1G30620 98 / 4e-22 MURUS4, HSR8, UXE1, MUR4 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23920 95 / 2e-21 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT2G47650 92 / 6e-20 UXS4 UDP-xylose synthase 4 (.1.2) AT3G62830 89 / 4e-19 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015496 [exp] 769 / 0 AT4G30440 764 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10019967 [exp] 690 / 0 AT4G30440 688 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10000787 [exp] 566 / 0 AT4G00110 731 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10030281 [exp] 562 / 0 AT4G00110 753 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10015876 [exp] 560 / 0 AT4G00110 751 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10009288 [exp] 551 / 0 AT4G00110 704 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10016640 [exp] 513 / 0 AT3G23820 746 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10022552 [exp] 508 / 3e-179 AT3G23820 742 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10032391 [exp] 507 / 3e-179 AT1G02000 620 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G100400 [exp] 745 / 0 AT4G30440 771 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.006G178500 [exp] 736 / 0 AT4G30440 757 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.014G068400 [exp] 578 / 0 AT1G02000 714 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.002G146500 [exp] 572 / 0 AT1G02000 724 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.001G320000 [exp] 545 / 0 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.017G059100 [exp] 537 / 0 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.012G128200 [exp] 499 / 8e-177 AT1G02000 544 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.003G114600 [exp] 500 / 1e-176 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1) Potri.002G116750 [exp] 167 / 3e-50 AT2G45310 209 / 6e-67 UDP-D-glucuronate 4-epimerase 4 (.1) Potri.011G156100 [exp] 100 / 9e-23 AT1G30620 712 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10008893 pacid=23144243 polypeptide=Lus10008893 locus=Lus10008893.g ID=Lus10008893.BGIv1.0 annot-version=v1.0 ATGCCGTCGCTGGAGGAGGAGCTGTTTCCGTCGACTCCGGGGAAGTTCAAGATCGACAGATCTCACCGCCAATTCCACCGATGCTTCTCCTCCACCAGCA CGATGTTCCTCTGGGCGCTCTTCTTGATCGCCTTGACTGCTTCCTACTTGAGCTTCCAGAGCTTCGTGGATTCCGGTAGCCGGTACCTCTCCGCCTCCTG GGGAGGGATCCAGTGGGAGAAGCAGATCCGGAACTCCGCTCAGATCCACCGCGCCGGTGGAATCTCCGTCCTCGTCACCGGATCCGCCGGATTCGTCGGC AGCCATGTCTCGTTAGCTCTCAAAAAGCGCGGGGATGGAGTCGTCGGGATTGATAACTTCAACGCCTACTACGATCCGTCTTTAAAACAAGCGAGGAGGT CGATGCTCGAGAGCCACGGGATCTACGTCGTGGTTGGAGACGTCAACGACGGGAAGCTCCTGTCTAAGCTCTTCGATGTTGTAGCGTTCACTCACGTGAT GCATCTCGCCGCTCAGGCGGGAGTCCGGTACGCGATGGAGAATCCGAATTCGTATGTCCATTCGAATATTGCAGGTTTAGTTACTCTCCTCGAGATCTGC AAGTCAGCAGATCCACAGCCGGCGATCGTCTGGGCTTCTTCAAGCTCCGTATACGGATTAAACGACAAGGTTCCGTTCTCTGAATCCGATCAAACCGATC AACCGGCGAGTCTCTACGCCGCGACGAAGAAAGCCGGAGAAGAAATCACTCACACCTACAACCACATCTATGGATTGTCAATCACCGGGTTGAGATTCTT CACTGTTTACGGACCATGGGGCCGACCCGACATGGCGTACTTCTCCTTCACGAGAAACATTCTCCAAGGGAAGCCGATTACGGTTTACCGGGGCAAGGAC CGGGTCGATTTGGCCCGGGATTTCACCTACATTGACGATATTGTTAAAGGGTGTTTAGGATCGCTGGATACTTCGGGGAAAAGCACCGGGTCGGGCGGGA AGAAGACGGGTCCTGCACCGTACAGGATATTCAACTTGGGGAATACTTCTCCGGTGACGGTGCCGAACTTGGTGGCGATACTGGAAAGGCATCTGAAGAC GAAGGCGAAGAGGAAGGTGGTGGATATGCCTGGAAACGGCGACGTTCCGTACACCCACGCGAATATTAGCTTGGCGAGGAAGGATCTCGGATATAAACCG ACGACGGATTTGCAGACCGGGTTGAAGAAGTTTGTCAAGTGGTATCTGTCGTATTATGGGTATAATCACGGGGTAAAGCTGTAA
AA sequence Show only first row Show all	>Lus10008893 pacid=23144243 polypeptide=Lus10008893 locus=Lus10008893.g ID=Lus10008893.BGIv1.0 annot-version=v1.0 MPSLEEELFPSTPGKFKIDRSHRQFHRCFSSTSTMFLWALFLIALTASYLSFQSFVDSGSRYLSASWGGIQWEKQIRNSAQIHRAGGISVLVTGSAGFVG SHVSLALKKRGDGVVGIDNFNAYYDPSLKQARRSMLESHGIYVVVGDVNDGKLLSKLFDVVAFTHVMHLAAQAGVRYAMENPNSYVHSNIAGLVTLLEIC KSADPQPAIVWASSSSVYGLNDKVPFSESDQTDQPASLYAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKD RVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGGKKTGPAPYRIFNLGNTSPVTVPNLVAILERHLKTKAKRKVVDMPGNGDVPYTHANISLARKDLGYKP TTDLQTGLKKFVKWYLSYYGYNHGVKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10008893 [exp]	0	1
AT2G27260			Late embryogenesis abundant (L...		Lus10005216 [exp]	1.4	0.9329
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10023213 [exp]	1.4	0.9261
AT4G10390			Protein kinase superfamily pro...		Lus10013656 [exp]	3.0	0.9242
AT4G00880			SAUR-like auxin-responsive pro...		Lus10032949 [exp]	3.2	0.9060
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10004724 [exp]	3.3	0.8940
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10015496 [exp]	4.0	0.9108
AT1G13250		GATL3	galacturonosyltransferase-like...		Lus10041489 [exp]	4.6	0.9028
AT5G67300	MYB	ATMYB44, AtMYBr...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10010260 [exp]	4.9	0.9031
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10034363 [exp]	5.5	0.8941
AT5G17350			unknown protein		Lus10034636 [exp]	6.3	0.8986

Compare expression of checked genes

Lus10008893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.