Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30420 99 / 2e-24 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G28040 82 / 2e-18 nodulin MtN21 /EamA-like transporter family protein (.1.2.3.4.5) AT1G43650 58 / 3e-10 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G64700 57 / 8e-10 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 53 / 3e-08 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 51 / 1e-07 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G56620 51 / 1e-07 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G75500 51 / 2e-07 WAT1 Walls Are Thin 1 (.1.2) AT2G37450 50 / 2e-07 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT3G53210 50 / 4e-07 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023211 [exp] 186 / 6e-58 AT4G30420 378 / 1e-130 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10019969 [exp] 77 / 9e-17 AT4G28040 334 / 8e-114 nodulin MtN21 /EamA-like transporter family protein (.1.2.3.4.5) Lus10010647 [exp] 74 / 2e-15 AT1G75500 492 / 6e-175 Walls Are Thin 1 (.1.2) Lus10041801 [exp] 68 / 2e-13 AT1G75500 365 / 6e-126 Walls Are Thin 1 (.1.2) Lus10019970 [exp] 68 / 2e-13 AT4G30420 351 / 5e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028586 [exp] 60 / 2e-10 AT1G43650 314 / 2e-102 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10028351 [exp] 55 / 5e-09 AT3G53210 311 / 1e-105 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028585 [exp] 55 / 6e-09 AT1G43650 364 / 1e-125 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10001523 [exp] 54 / 1e-08 AT1G09380 446 / 6e-157 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G099500 [exp] 145 / 3e-42 AT4G30420 402 / 7e-140 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G177600 [exp] 124 / 6e-34 AT4G30420 375 / 4e-129 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G177800 [exp] 105 / 5e-27 AT4G30420 320 / 2e-107 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G177700 [exp] 87 / 2e-20 AT4G30420 353 / 1e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G068300 [exp] 72 / 1e-14 AT1G43650 360 / 6e-124 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.005G192100 [exp] 68 / 2e-13 AT1G43650 305 / 2e-102 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.005G006600 [exp] 54 / 2e-08 AT1G09380 477 / 2e-169 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G453000 [exp] 52 / 4e-08 AT3G30340 369 / 4e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 52 / 8e-08 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.007G017800 [exp] 51 / 1e-07 AT1G75500 414 / 4e-144 Walls Are Thin 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008894 pacid=23144247 polypeptide=Lus10008894 locus=Lus10008894.g ID=Lus10008894.BGIv1.0 annot-version=v1.0 ATGGATAATTACAAACCAGAGATAGCCATGGCGTATTTACAATTCTCATACGCAGTCATTTCCCTAGCAGGAAGAGCCGCCCTACTAGAAGGATTGAGTC CCAGGGTTTTCGTTGGCTACAGACAGGCCTTTGCCGCTCTCACCATCTCCCCCGTTGCTTACTTTTCAAGCAGGGGGAAATCAGGCGGCGCTTCCATTGG GATCAGAAGCTTCACTCTGATCTTTCTGGCTGCTCTCATAGGTGTGAGGGGAGCTCTAACAATGGCTCTAATCAAAGGGCCACAACTTGTCATGAACAAT GGAGGGAGTGAGGATTGGCTTTTGGGATGTGGCTTTGCTAGTGCTTGTTGTTGGTCCATTTGGCTCATTTTACAGGTTCCCGTCACTACTGCCTACCCAT ATCATCTGTCAGTGTCGGCTTGGATGTGTTTCATAGGAGCACTACACTTGGTAGGAGCAATTGAAGTGACACTTGGACTGTACGCAGTGTTGTGGGGGAA GTCGAGAGATTATGCGATCAAAGTCGAAGTAGGAATCGATCCAAACTCGGGTAAAGATGAAACCAGAAGTGGAATTAGTGATCTTGGGGAACCAATGTTG TGTACCAAAATATGA
AA sequence Show only first row Show all	>Lus10008894 pacid=23144247 polypeptide=Lus10008894 locus=Lus10008894.g ID=Lus10008894.BGIv1.0 annot-version=v1.0 MDNYKPEIAMAYLQFSYAVISLAGRAALLEGLSPRVFVGYRQAFAALTISPVAYFSSRGKSGGASIGIRSFTLIFLAALIGVRGALTMALIKGPQLVMNN GGSEDWLLGCGFASACCWSIWLILQVPVTTAYPYHLSVSAWMCFIGALHLVGAIEVTLGLYAVLWGKSRDYAIKVEVGIDPNSGKDETRSGISDLGEPML CTKI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10008894 [exp]	0	1
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10001887 [exp]	8.2	0.9094
AT3G57030			Calcium-dependent phosphotries...		Lus10034411 [exp]	8.6	0.9274
AT5G66780			unknown protein		Lus10041741 [exp]	11.7	0.8138
AT3G56290			unknown protein		Lus10029051 [exp]	12.3	0.9234
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10028619 [exp]	15.2	0.9213
AT1G67623			F-box family protein (.1)		Lus10022147 [exp]	17.5	0.9213
AT1G26420			FAD-binding Berberine family p...		Lus10023368 [exp]	19.6	0.9213
					Lus10024550 [exp]	21.5	0.9213
AT2G20420			ATP citrate lyase (ACL) family...		Lus10024923 [exp]	23.2	0.9213
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10027433 [exp]	24.8	0.9213

Compare expression of checked genes

Lus10008894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.