Plant FIBer expression Database

Lus10008896 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57790 43 / 3e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023209
[exp]
256 / 3e-87 AT5G57790 44 / 2e-05 unknown protein
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10008896 pacid=23144266 polypeptide=Lus10008896 locus=Lus10008896.g ID=Lus10008896.BGIv1.0 annot-version=v1.0
ATGGCGAGTAAAGCTCAGTTACGAACAGTCCTGAAGAAGACGAAGAATAAACCCACCAATAGAAACAACAGAGCATCGTGGTTACAGAAAGCCGTCAAGT
ATCTGAAATCCGATTCATACCTCTTCGGTCCTCTGCTCGATCCTTCGCCGTCGACGACCAACAATGGATGTTCGTCGGTGCACACGCCTAGATTCCTATG
GTTTCGAAGGAAGAGTACTAAAGGATTGATTGGAGATAATGTTATGGAGTATTTGAAGTCTGATTCTTACTTGTATGGTCCCTTTCTGCTGAATCAAAGG
CCAAATGACTGTAATTTAAAGAAAGTGATGAGTAAGGACAAGAACAAATATTCCTCTGTTTTTGAACCGTCAAATGTAACGGTGGAGAATAAATTGCTCC
ATGAAGAAGAAGACGACGACGGCGGTGACGTTGTTCTTCCACTTACCCCGGAGAGGAACCATATCAATGGTGGTCATCAGCGGCAGAAGAAATCGGTACG
ACGTAAGGAAATGGTGACGGTGACCCACATGGTTCGACGAAGCTCCCGCTCTTCTCCATCTTCAGCCGTGTCAGGGATGACAGGGAAGAAGTCGATACCA
GACCCGCCATCACGGTCGAGGATGCTCGCTGTTGAACGTTGA
AA sequence
>Lus10008896 pacid=23144266 polypeptide=Lus10008896 locus=Lus10008896.g ID=Lus10008896.BGIv1.0 annot-version=v1.0
MASKAQLRTVLKKTKNKPTNRNNRASWLQKAVKYLKSDSYLFGPLLDPSPSTTNNGCSSVHTPRFLWFRRKSTKGLIGDNVMEYLKSDSYLYGPFLLNQR
PNDCNLKKVMSKDKNKYSSVFEPSNVTVENKLLHEEEDDDGGDVVLPLTPERNHINGGHQRQKKSVRRKEMVTVTHMVRRSSRSSPSSAVSGMTGKKSIP
DPPSRSRMLAVER

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10008896
[exp]
0 1
AT1G79700 AP2_ERF Integrase-type DNA-binding sup... Lus10005513
[exp]
1.7 0.9255
AT3G02230 ATRGP1, RGP1 ARABIDOPSIS THALIANA REVERSIBL... Lus10016749
[exp]
6.9 0.8716
AT2G37530 unknown protein Lus10024416
[exp]
9.5 0.9210
AT1G03700 Uncharacterised protein family... Lus10011179
[exp]
15.0 0.8905
AT1G16060 AP2_ERF ADAP ARIA-interacting double AP2 do... Lus10001553
[exp]
15.3 0.8896
AT2G48140 EDA4 embryo sac development arrest ... Lus10014683
[exp]
18.7 0.8846
AT1G68850 Peroxidase superfamily protein... Lus10029094
[exp]
20.1 0.8757
AT2G16750 Protein kinase protein with ad... Lus10014122
[exp]
21.8 0.8937
AT5G58860 CYP86A1 "cytochrome P450, family 86, s... Lus10040687
[exp]
21.9 0.8741
AT4G02050 STP7 sugar transporter protein 7 (.... Lus10019070
[exp]
29.7 0.8662

Lus10008896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.