Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24560 196 / 8e-62 ATPP2-B12 phloem protein 2-B12 (.1) AT1G80110 191 / 1e-59 ATPP2-B11 phloem protein 2-B11 (.1) AT2G02240 192 / 2e-59 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT2G02230 183 / 6e-56 ATPP2-B1 phloem protein 2-B1 (.1) AT2G02360 180 / 2e-55 ATPP2-B10 phloem protein 2-B10 (.1) AT2G02250 181 / 4e-55 ATPP2-B2 phloem protein 2-B2 (.1) AT2G02340 170 / 3e-51 ATPP2-B8 phloem protein 2-B8 (.1) AT1G09155 158 / 1e-46 ATPP2-B15 phloem protein 2-B15 (.1) AT2G02300 148 / 8e-43 ATPP2-B5 phloem protein 2-B5 (.1) AT1G56240 140 / 6e-40 ATPP2-B13 phloem protein 2-B13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023207 [exp] 473 / 3e-170 AT2G02240 213 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Lus10042713 [exp] 226 / 1e-72 AT2G02230 235 / 1e-75 phloem protein 2-B1 (.1) Lus10029674 [exp] 216 / 7e-69 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1) Lus10018171 [exp] 210 / 3e-66 AT2G02240 219 / 2e-69 maternal effect embryo arrest 66, F-box family protein (.1) Lus10025666 [exp] 206 / 1e-64 AT5G24560 219 / 5e-69 phloem protein 2-B12 (.1) Lus10029872 [exp] 177 / 7e-54 AT1G09155 272 / 3e-91 phloem protein 2-B15 (.1) Lus10020674 [exp] 171 / 1e-51 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10020673 [exp] 170 / 2e-51 AT1G09155 272 / 2e-91 phloem protein 2-B15 (.1) Lus10015208 [exp] 155 / 2e-45 AT1G09155 270 / 2e-90 phloem protein 2-B15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G267000 [exp] 218 / 2e-69 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G015800 [exp] 213 / 1e-67 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016100 [exp] 204 / 1e-64 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.018G016000 [exp] 192 / 7e-60 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.006G266900 [exp] 189 / 2e-58 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.005G022000 [exp] 187 / 7e-58 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.013G012600 [exp] 172 / 3e-52 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.001G050100 [exp] 171 / 6e-52 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.006G117600 [exp] 97 / 2e-23 AT3G53000 486 / 2e-175 phloem protein 2-A15 (.1) Potri.014G075800 [exp] 93 / 5e-22 AT3G61060 397 / 4e-140 phloem protein 2-A13 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10008898 pacid=23144223 polypeptide=Lus10008898 locus=Lus10008898.g ID=Lus10008898.BGIv1.0 annot-version=v1.0 ATGGAGAAGCAGAGCAAAAATTCATCATCAGTTAGTAAGAACATCAACGATCTCCCTGAAGATTGCTTAGCAGAGATCTTATCGCAAACCGGACCCATCG AATCTTGCAGGCTAGCTACCGTCTCTCCATCCTTCAGCTCCGCTTCCAATTCCTCCGCCGTCTGGGACAAGTTTCTCCCGCCGGATTGCCACGTCATCCT CTCCCGTTCTTCTTCCGACGATCGAGCTTCTCTTCCGAAGAAACAGCTCTTCCTCAGTCTCTGTCGACACCCGATCCTTATCGACGGCGGAAGAAAGAGT TTCTCGCTGGACAAACGAACTGGGAAGAAGTGCTTCATGATATCTGCTAGAGATCTCCGGATCGAATGGGGCGATAGTCCTCTCTACTGGAGATGGATTT CCCATCCTGATTCCAGATTTGGTGAAGTGGCGGAGCTGGTGGACGTGTGTTGGTTCGAGATCAGGGGAATGATAGAGACCCATTTGCTGTCTCCATCAAC CCAGTACGCAGCTTACTTGGTGTTCAAGTACTTGCCGGAGAGGACCGCGTTCCGACTAGGGTTCCACCGGCAGGATTTCACTGCGACAGTAGCAGAATCG AGCCGGACGGTGTGTTTAGAGATAGGAACAGGGGACTGGAGGAGGCAGTTTGGGATGTACAATGTCGGGGGAAGCGATGCAGAGGAGAAATTTGAATTTC CAAAGCTGAGGAAGGATGGGTGGCTTGAAGCAGAGCTTGGTGAGTTCTATGTTGGTGAAAATGGAGATATGGTGGAGGTGGAAATAGGGTTGAAGGAAGT GATCTCCGGTCCGAAATCTGGAATGGTGGTTCTTGGCATGGAGATTAGGCCTAAAGGTTAG
AA sequence Show only first row Show all	>Lus10008898 pacid=23144223 polypeptide=Lus10008898 locus=Lus10008898.g ID=Lus10008898.BGIv1.0 annot-version=v1.0 MEKQSKNSSSVSKNINDLPEDCLAEILSQTGPIESCRLATVSPSFSSASNSSAVWDKFLPPDCHVILSRSSSDDRASLPKKQLFLSLCRHPILIDGGRKS FSLDKRTGKKCFMISARDLRIEWGDSPLYWRWISHPDSRFGEVAELVDVCWFEIRGMIETHLLSPSTQYAAYLVFKYLPERTAFRLGFHRQDFTATVAES SRTVCLEIGTGDWRRQFGMYNVGGSDAEEKFEFPKLRKDGWLEAELGEFYVGENGDMVEVEIGLKEVISGPKSGMVVLGMEIRPKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24560		ATPP2-B12	phloem protein 2-B12 (.1)		Lus10008898 [exp]	0	1
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10011345 [exp]	6.2	0.9490
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10028227 [exp]	11.2	0.9454
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10010747 [exp]	13.0	0.9347
AT2G05910			Protein of unknown function (D...		Lus10033432 [exp]	15.2	0.9446
AT1G60010			unknown protein		Lus10030835 [exp]	17.1	0.9427
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Lus10006502 [exp]	17.2	0.9410
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	18.7	0.9452
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Lus10005886 [exp]	21.5	0.9417
AT3G30390			Transmembrane amino acid trans...		Lus10035140 [exp]	24.2	0.9336
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10006498 [exp]	24.6	0.9445

Compare expression of checked genes

Lus10008898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.