Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30400 85 / 6e-19 RING/U-box superfamily protein (.1) AT2G18650 74 / 3e-15 MEE16 maternal effect embryo arrest 16, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023206 [exp] 306 / 4e-106 AT4G30400 91 / 7e-21 RING/U-box superfamily protein (.1) Lus10015502 [exp] 117 / 6e-31 AT4G30400 251 / 1e-79 RING/U-box superfamily protein (.1) Lus10019973 [exp] 114 / 1e-29 AT4G30400 252 / 4e-80 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G098500 [exp] 97 / 4e-23 AT4G30400 339 / 7e-112 RING/U-box superfamily protein (.1) Potri.006G176700 [exp] 87 / 9e-20 AT4G30400 304 / 3e-98 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008899 pacid=23144256 polypeptide=Lus10008899 locus=Lus10008899.g ID=Lus10008899.BGIv1.0 annot-version=v1.0 ATGGAACGGTATGCTTTTGTGTTCGAGTCCGGCGAACAATCGTTTCGAAGAATACACTCCTCGAGACGAGTTGACTCTCTACCCGAACCGTCCGGTAGCG AGATTTTGTTGTCGTCTCGAAACGTTATCGTTTCGAAACCGGTCAGTTTCGGTCCGGGTAGGGTTGTTCAGGTCAAATTAGGGAAATTTCGTAATGTAGA AGGAAGCGGAGATGGCGATGGCAATGACAATGCTGACGTTCGGAGATGTTTTTCGATGGGTTCGTGCCAGTACGTGATGAATTCGAACTCTGCCCTTCAG GTTCCCGTTCAGATTGTGAAGAATAAGAAGAAGAAGGCTGCTCTGCCTCCGGGCCACCGGTACGCAGTGTCGGTCTGCGGTAGCGAATCGGGAAGAGACC TCGGCAGATTGGACGAAGAAACGAAAGGTTATTGTGGAAAGAATTCAAGCATTATGCCCGAAAGCTTTTCGATTTCGAAGAAGAATAAGAAACAGGGGAG TTTGGATGCAGGGGAAGTGAGATCTGTTTCTATGAGGTTTCACCAAATGTTGAACAGTGGTGAGGTGGGCAGCTCTAGTGGGAACGGTAGGGAATTGGAC GATTCGAAAACACCGTCGTTTGCTAGGAGGACGCTGCTGTGGCTTGCTGGGAGGCAGCAGAACAAGATTGTTGATTCGAATTTGGGTCCAAATGTTTAG
AA sequence Show only first row Show all	>Lus10008899 pacid=23144256 polypeptide=Lus10008899 locus=Lus10008899.g ID=Lus10008899.BGIv1.0 annot-version=v1.0 MERYAFVFESGEQSFRRIHSSRRVDSLPEPSGSEILLSSRNVIVSKPVSFGPGRVVQVKLGKFRNVEGSGDGDGNDNADVRRCFSMGSCQYVMNSNSALQ VPVQIVKNKKKKAALPPGHRYAVSVCGSESGRDLGRLDEETKGYCGKNSSIMPESFSISKKNKKQGSLDAGEVRSVSMRFHQMLNSGEVGSSSGNGRELD DSKTPSFARRTLLWLAGRQQNKIVDSNLGPNV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30400			RING/U-box superfamily protein...		Lus10008899 [exp]	0	1
AT4G31690	B3	REM9	Transcriptional factor B3 fami...		Lus10042406 [exp]	1.0	0.9436
AT5G63900			Acyl-CoA N-acyltransferase wit...		Lus10000368 [exp]	2.4	0.9240
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10036567 [exp]	3.5	0.9002
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10039667 [exp]	4.6	0.9042
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10041362 [exp]	5.3	0.8828
AT3G43720			Bifunctional inhibitor/lipid-t...		Lus10001153 [exp]	5.5	0.8926
					Lus10024122 [exp]	7.9	0.8761
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10002777 [exp]	9.4	0.8687
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10035896 [exp]	11.7	0.8493
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007658 [exp]	12.0	0.8513

Compare expression of checked genes

Lus10008899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.