Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30360 374 / 4e-122 ATCNGC17 cyclic nucleotide-gated channel 17 (.1) AT2G24610 371 / 9e-121 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT5G14870 345 / 4e-111 ATCNGC18 cyclic nucleotide-gated channel 18 (.1) AT3G48010 341 / 3e-109 ATCNGC16 cyclic nucleotide-gated channel 16 (.1) AT1G19780 320 / 9e-101 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT2G28260 317 / 3e-100 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT1G15990 317 / 4e-100 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT5G57940 312 / 2e-98 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT4G30560 310 / 1e-97 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT2G23980 308 / 1e-96 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023203 [exp] 415 / 4e-136 AT4G30360 1002 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10019983 [exp] 403 / 6e-133 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10015510 [exp] 402 / 9e-133 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10020122 [exp] 355 / 8e-115 AT2G24610 879 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10042434 [exp] 355 / 2e-114 AT2G24610 916 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10039415 [exp] 348 / 1e-111 AT5G14870 980 / 0.0 cyclic nucleotide-gated channel 18 (.1) Lus10039486 [exp] 347 / 3e-111 AT5G14870 985 / 0.0 cyclic nucleotide-gated channel 18 (.1) Lus10026924 [exp] 347 / 9e-111 AT2G24610 868 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10026233 [exp] 338 / 8e-108 AT2G24610 922 / 0.0 cyclic nucleotide-gated channel 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G097600 [exp] 397 / 2e-131 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.006G271480 [exp] 379 / 2e-129 AT2G24610 493 / 2e-171 cyclic nucleotide-gated channel 14 (.1) Potri.018G009200 [exp] 385 / 2e-127 AT2G24610 939 / 0.0 cyclic nucleotide-gated channel 14 (.1) Potri.013G108200 [exp] 348 / 6e-113 AT5G14870 949 / 0.0 cyclic nucleotide-gated channel 18 (.1) Potri.017G067000 [exp] 342 / 6e-110 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1) Potri.009G010700 [exp] 325 / 2e-103 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.003G183000 [exp] 318 / 2e-100 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.018G106100 [exp] 317 / 1e-99 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.001G043900 [exp] 305 / 3e-95 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.015G019100 [exp] 300 / 8e-94 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10008900 pacid=23144234 polypeptide=Lus10008900 locus=Lus10008900.g ID=Lus10008900.BGIv1.0 annot-version=v1.0 ATGGTGGAGCAAGAAATAAACGGGCTCGAGGCGATTGGGAAGGTGGCTAAGATTTCAAAAGGGATGAAACTACATGGGTTTGTTGTGAACCTTGTGTATG GAATGGTGGGTTGGGGTTTGGTGAAGTTAATGTCTTGGATCGGGTTTCAGTTTCCACCGGTCGGGATGGATTTGGCCGGGTTTGGGTGGCCGACGACAGG TCAGTTGTTTCTCGAGTTCGTCGTGTCAAGTTGTTTTTGTGTGATTAAGATGTTGTGGTGGATGGCTTATACAATTATGTTATTTGAGGGAATGAAGAGA CATGGAGAAGAGGTTCTTGAGTTGGTGGAAGAAGTGGATCATCCGTACACCAAAGTCCCCTTTGTAACTGCAGTTTCAGGGAGTGGATATACCAAGGCTG AGGTGATCATGGTCGACCCGACGGAGGCAAAGCGACTAGCTGCCAAACAAATGGTGGAAATCCGAAGGAAGGAGAAATTCGAGAGGCGGATGCAAATTGA AGCAATCAATGGAGCATGGGGTATGATAGGTCTCACAGCAGGTTTGGTCATTGAAGGTTGCACTGGAAAGAGCATACTAGAACAGGGACCTAAGTTGATT GCTAGGAGGTACATCCGGTCCGACTTCTTCATTGATCTCATTGCCACGCTGCCATTCCCTCAGATTGTTGCATGGTTCATCATCCCAGCGACTAGAAAGC CTCACACAGATCATAACAACAATGCGCTGGCTCTGATTGCTACTGGGTTGGTAACAAGGACAGCTTGGGCTGGAGCTGCTTACAATCTGCTCTTGTACAT GTTAGCAAGCCATACATACCTGCAATCTCTCACCGTTAGACTCGAGGAATGGAGGCTTAAGCGAAGAGATACTGAAGAATGGATGAAACATCGCCAACTC CCAGAAGACCTGAAGCAGCATCTTCGACGTTTCGTTCAGTACAAGTGGGTCGCGACTCGAGGTGTCCACGAGGATGATACCCTTCGTGGCTTACCTACTG ATCTTCGTCGCGACATTGAGCGCCACCTCTGCCTTGACCTTGTTCGACGAGTCCCTTTCTTCTCGCAGATGGACGATCAGATCCTCGATGCAATGTGCGA GCGCCCGGTATCCTCCCTCAGCACGCAAGGCACCTATATTGTCCGGGAAGGCGACCCCGTAACGGAAATGCTGTTCATCATTAGGGGAAGTCTCGAAAGC TCGACCACGAACGGTGGCAGGACCGGTTTCTTCAACTCGATCATGCTCAAGCCCGGAGACTTTTGTGGAGAGGAGCTTTTAGCGTGGGTCTTGCAGCCCA AGTCATCTCTCAACCTGCCATCCTCGACACGAACTGTCAGGGCTCTCAACGAGGTCGAAGCGTTCGCTCTACGAGCCGAGGATCTTAGGTTCGTGGCCAA CCAATTCCGACGATTACATAGCAAGAAGCTGCAGCATACGTTCGGTACCACTCGCATCATTGGAGGACATGGGCGGCATGCTTCGTGCAAGCAGCTTGGC AACGGCACAAGAAGAAGTTGGTGGAACATAGCCTCACCATGTCCTAATCGTTTCATATGA
AA sequence Show only first row Show all	>Lus10008900 pacid=23144234 polypeptide=Lus10008900 locus=Lus10008900.g ID=Lus10008900.BGIv1.0 annot-version=v1.0 MVEQEINGLEAIGKVAKISKGMKLHGFVVNLVYGMVGWGLVKLMSWIGFQFPPVGMDLAGFGWPTTGQLFLEFVVSSCFCVIKMLWWMAYTIMLFEGMKR HGEEVLELVEEVDHPYTKVPFVTAVSGSGYTKAEVIMVDPTEAKRLAAKQMVEIRRKEKFERRMQIEAINGAWGMIGLTAGLVIEGCTGKSILEQGPKLI ARRYIRSDFFIDLIATLPFPQIVAWFIIPATRKPHTDHNNNALALIATGLVTRTAWAGAAYNLLLYMLASHTYLQSLTVRLEEWRLKRRDTEEWMKHRQL PEDLKQHLRRFVQYKWVATRGVHEDDTLRGLPTDLRRDIERHLCLDLVRRVPFFSQMDDQILDAMCERPVSSLSTQGTYIVREGDPVTEMLFIIRGSLES STTNGGRTGFFNSIMLKPGDFCGEELLAWVLQPKSSLNLPSSTRTVRALNEVEAFALRAEDLRFVANQFRRLHSKKLQHTFGTTRIIGGHGRHASCKQLG NGTRRSWWNIASPCPNRFI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10008900 [exp]	0	1
AT2G47830			Cation efflux family protein (...		Lus10009817 [exp]	2.0	0.8224
AT1G48170			unknown protein		Lus10022783 [exp]	3.9	0.7750
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10011443 [exp]	5.1	0.8178
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10010186 [exp]	6.6	0.7857
AT1G27180			disease resistance protein (TI...		Lus10040576 [exp]	6.9	0.7875
AT1G48170			unknown protein		Lus10022781 [exp]	7.7	0.7545
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Lus10007548 [exp]	11.7	0.7574
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10010185 [exp]	13.0	0.7457
AT5G14490	NAC	ANAC085	NAC domain containing protein ...		Lus10003668 [exp]	17.9	0.7713
AT5G02320	MYB	MYB3R-5, ATMYB3...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10008010 [exp]	18.7	0.7744

Compare expression of checked genes

Lus10008900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.