Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18710 379 / 2e-126 SCY1 SECY homolog 1 (.1) AT2G31530 54 / 1e-07 EMB2289, SCY2 SECY HOMOLOG 2, EMBRYO DEFECTIVE 2289, SecY protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023202 [exp] 805 / 0 AT2G18710 849 / 0.0 SECY homolog 1 (.1) Lus10014663 [exp] 68 / 7e-12 AT2G31530 705 / 0.0 SECY HOMOLOG 2, EMBRYO DEFECTIVE 2289, SecY protein transport family protein (.1) Lus10000654 [exp] 54 / 1e-07 AT1G03180 287 / 1e-94 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G097500 [exp] 391 / 1e-131 AT2G18710 781 / 0.0 SECY homolog 1 (.1) Potri.006G175300 [exp] 384 / 1e-128 AT2G18710 739 / 0.0 SECY homolog 1 (.1) Potri.002G053900 [exp] 59 / 3e-09 AT2G31530 789 / 0.0 SECY HOMOLOG 2, EMBRYO DEFECTIVE 2289, SecY protein transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00344 [flax] [poplar] SecY SecY translocase
Representative CDS sequence Show only first row Show all	>Lus10008901 pacid=23144237 polypeptide=Lus10008901 locus=Lus10008901.g ID=Lus10008901.BGIv1.0 annot-version=v1.0 ATGGTGATAACAGTAGGACAAGCAACGCCAACTGTATCATTCAAACTCTCTCCTATCAATCCGACGCCATTCCTTACAAATTTCTCCCGGCGGCGACCCA CTTTATCCTTCCGGCGAAAACCCATCAAACTAACCGCTGCCGCCGCTACTTCCAAACGATGGGGCACTACTCTCAGCTCCAAGAGCTATGAAGTTGCAGC TTTCGATCCTTTGGGTATTAATTTGAATGACGAGTCTGGTTTAGCTGCAGCTTGGGAAAGTTTTCTGTCTTTGTTGTCGCCTGCTTTTGAGTCGAGTAAT GCCAGAAAGGACAGGCCTTTACCTCGAGGAGTTGCTGCTGCAATTGAGGACAGTTCAATAGACTTTGGGGACTTTTTCAAGGGACCATTGCCAGGGAAGT TCCTCAAGCTTCTAGGGTTCTTAGCTCTTTCTCGCCTGGGAATCTATATACCTCTTGGTGGAGTTAACAGGGAGGCCTTCGTCGGGAACTTGGACCAGAA TAGCTTGTTGAGCACTTTGGATTCCTTCTCTGGTGGAGGCATTGGTAGGCTTGGGATATGTTCACTTGGTATAGTTCCTTTCATCAATGCACAGATTGTG TTTCAGCTCCTTGCTCAGATCAACCCCAAGTTGCAAGATCTTCAGAAGAGAGAAGGGGAAGCTGGTCGAAAGAAGATCCTCGAGTATACTCGATATGCTT CCGTTGGCTTTGCCATAGTGCAGGCAATTGGTCAAGTCTTTTACCTTCGTCCCTATGTGAATGACTTCAGTTCGGAGTGGGTTATATCGACCGTGACATT GCTGACACTCGGGTCGGTGTTTTTTAAAGAAGCAGAGAGAAAGATACCACTGAACTATGCCTCAAGATATAACAGCAGCAGTGGAAGTGGCCTTCAAAAG TCTGCTTATCTTCCATTCAAGGTGAATAGTTCTGGAGTGATGCCGATCATATTTTCTACATCGTCGTTGGCTCTCCCTGGCACGCTAGCCCGGTTTACTG GGATATCCGCCCTAAAAAACGCTGCATTAGCTTTGAACCCTGGAGGTTCATTCTATCTCCCTACAAACATTCTACTAATAGCCTTCTTCAACTATTACTA CACCTTCCTGCAATTGGACCCTGATGATGTCAGTGAACAATTGAAGCGCCAAGGGGCTTCCATCCCACTGGTTCGGCCCGGTAAAAGCACTGCTGCTTAT CTCAAGACAGTTTTGAGCCGGATATCGGTTTTGGGTTCTGCTTTTTTAGCGATCCTAGCAGCCGGTCCGGCTGTGGTTGAACAGGTGACCCACTTGACAG CATTCAGAGGGTTTGCAGGCACATCTGTGCTTATCCTTGTTGGGTGTGCAACTGATACAGCAAGAAAAGTTGAAGCAGAGATCATTTCCCAGAAGTACAA GAACATTGAGTTCTATGATGTTGATAAGTATGGCAAATGA
AA sequence Show only first row Show all	>Lus10008901 pacid=23144237 polypeptide=Lus10008901 locus=Lus10008901.g ID=Lus10008901.BGIv1.0 annot-version=v1.0 MVITVGQATPTVSFKLSPINPTPFLTNFSRRRPTLSFRRKPIKLTAAAATSKRWGTTLSSKSYEVAAFDPLGINLNDESGLAAAWESFLSLLSPAFESSN ARKDRPLPRGVAAAIEDSSIDFGDFFKGPLPGKFLKLLGFLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIV FQLLAQINPKLQDLQKREGEAGRKKILEYTRYASVGFAIVQAIGQVFYLRPYVNDFSSEWVISTVTLLTLGSVFFKEAERKIPLNYASRYNSSSGSGLQK SAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGISALKNAALALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAY LKTVLSRISVLGSAFLAILAAGPAVVEQVTHLTAFRGFAGTSVLILVGCATDTARKVEAEIISQKYKNIEFYDVDKYGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18710		SCY1	SECY homolog 1 (.1)		Lus10008901 [exp]	0	1
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10036021 [exp]	2.8	0.9537
AT3G53700		MEE40	maternal effect embryo arrest ...		Lus10012328 [exp]	4.0	0.9441
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Lus10025423 [exp]	4.9	0.9484
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10039810 [exp]	5.7	0.9471
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10016728 [exp]	8.1	0.9372
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10017156 [exp]	8.6	0.9149
AT3G53700		MEE40	maternal effect embryo arrest ...		Lus10006373 [exp]	10.2	0.9296
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10014534 [exp]	11.3	0.9354
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10005013 [exp]	11.4	0.9349
AT2G43030			Ribosomal protein L3 family pr...		Lus10001337 [exp]	11.8	0.9372

Compare expression of checked genes

Lus10008901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.