Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30350 375 / 8e-118 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57710 369 / 7e-115 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT2G29970 152 / 3e-38 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT1G07200 137 / 2e-33 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G40130 117 / 5e-27 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G52490 94 / 9e-20 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57130 89 / 4e-18 Clp amino terminal domain-containing protein (.1) AT4G29920 88 / 1e-17 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G15450 74 / 3e-13 AtCLPB3, APG6, CLPB3, CLPB-P CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) AT5G50920 68 / 1e-11 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023201 [exp] 1234 / 0 AT5G57710 404 / 1e-127 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019984 [exp] 766 / 0 AT5G57710 912 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015511 [exp] 725 / 0 AT5G57710 899 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10036183 [exp] 133 / 6e-32 AT2G29970 566 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038320 [exp] 132 / 2e-31 AT2G29970 696 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028281 [exp] 125 / 2e-29 AT1G07200 407 / 3e-127 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10040206 [exp] 117 / 6e-27 AT2G40130 569 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10016966 [exp] 92 / 6e-19 AT3G52490 606 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021291 [exp] 92 / 6e-19 AT3G52490 690 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G097300 [exp] 554 / 0 AT5G57710 998 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G175200 [exp] 543 / 0 AT5G57710 913 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G069100 [exp] 122 / 2e-28 AT2G29970 610 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G252500 [exp] 120 / 7e-28 AT2G29970 668 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G188200 [exp] 116 / 2e-26 AT1G07200 624 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G046700 [exp] 114 / 5e-26 AT2G29970 658 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G140900 [exp] 102 / 2e-22 AT5G57130 751 / 0.0 Clp amino terminal domain-containing protein (.1) Potri.016G071800 [exp] 94 / 1e-19 AT3G52490 785 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G204500 [exp] 92 / 6e-19 AT3G52490 852 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G073800 [exp] 90 / 2e-18 AT4G29920 693 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008902 pacid=23144262 polypeptide=Lus10008902 locus=Lus10008902.g ID=Lus10008902.BGIv1.0 annot-version=v1.0 ATGTCCAACGCGTTGGCGACAGCGCTGAAAAGGGCGCAGGCGAATCAGAGAAAGGGATGCCCTGAGCAGCCTCCTCAGCAGTCGCTGCTGGCTGTGAAAG TTGAGCTTGAGCAGCTGATTATATCGATTTTGGACGACCCGAGTGTCAGCCGGGTCATGAGAGAAGCTAAGTTCTCTAGTCCGGCTGTTAAGGCCACCAT TGAAAAGTCTTTGAGCTCTGGACTTTCCGGTTCGGGTTCGGAGCCGCGTCGGATGGGGAATGAGGGAGTCAAACGGGTCGTTGACGTTGCTGGTAGAGCT CCTCCTATTCCTGGATTGTTTCCAAGGATTGGGACTACTGGATTCCTTGGAACCTCTCTTGAGTCTATGTCACCATTGAAGGCCTTTCCTACTGTGGCAA TTGCTCCAGTACTGAATCGGAATCCTGTAGGGAAAACAGACTTCTGTCCTGAGTGCAAGCATAACTATGAGCAAGAGCTGGCGAAACACGTTAAGAAGCC AAAGGATGCTAACTCGGAATCAGCTCAGCAGCAGTCTTTGCCACTATGGTTGAAGAATGCAACTACTGAACAAGCCGGTGTCGAACCTTTGGATCAGTCT TTGACCAAGGATCACGAACTAATCCAGCAGCAGAAGACTATGGCACTGCAAAAGAAATGGCACGACACATGCTTGCGTCTTCACCCCGGCCATCATCGAT CGAATCGTGGTCCCGGCAGGCTAACTATCTCAATGCCGAGCTTGTACAATCAAAGAAACAACAACCTGGTACCTTGCGTTCCCAAGATTAACTTGACTGG AGGATATCTCACTCTGGAACCAAAAGCAAATCCGTCACCTAAACAAAGTCCGAAACTCTTGACAAGTCCACCTCGAAGCCCTGTGAGAACAGAGCTTGTT CTTGGGAATCATCCTCCTAAAGTGGCTGCTGAAAGCATTCCTTCCTCCAAGTTCCAGATAAGCAAGCTGCTTGACAAATTGGATGCTGATGAGTTCAAGA AGTTGCTAAAGGGTCTTATGGAGAAAGTATGGTGGCAGCAAGATGCAGCATCAGCAGTTGCTACAGTGATCACACAATGGAAGCTAGGCAGTGAGAAAAG GAGAGGTAGTAATAATGTATGGCTTTTGTTCACAGGTCCTGACAGGATTGGTAAAAAGAAGATGGCAGTTGCTCTTTCCGAGCTGGTTCGCCACTCCAAT CCGGTCACGGTTCATCTTGGTTTTTCGGGTCGAGAAGATGGCGGCTTCGGACGTGGTAAGACTGTGGTGGACCGAATCGTTGAGGCGGTTCGGAGGAACC CGTTTTCGGTGGTGGTGCTCGAGGACATCGACGAAGCAGATATGGTGGTGAAGGGGACTATAAAGAGAGCGATGGAAAGGGGTCGACTTTCCGACTCGCA TGGCCGAGAAATCAGCCTTGGAAATGTGATTTTCATACTCACTGCTGAGGGTCTCGAGTTCGAGTCCAGCCATCATGCGCTTGATGAGAAGAAGCTTGCG AGCTTTGTAGGCGGAGGTTGGCAGTTGAGGCTGTCTGTTAGCGGGAAGACAGCTAAGCGTCGAGCCAGTTGCAACAACTGGCTCGACAAAAGGCCTAAGA AGGACATGAGATCTGGACTATCGTTCGACCTGAATGAAGAAGCCGGATCTCAAAATTCGAGCGATTTGACCGTTGATCATGAAGATGAACAATTCCTCTC TAGTAGATTACTAACACCAACTACTAATACTAGTGCCACCTCATCATCATCATTGCCTTTGGAGCTACTGGATTTGTTGGACGACAGCATCACCTTCAAA CCGGTCGATTTTGGTGCAATGAGAAGGGACATTTTGAAATCGATCATCGACAGAGCTTCGTCAGTCATTGGTGATGCTAACAACTTAGAGCTTGAACCGG ATGCGTTGGGGAAAATTGCGGGTGGGTTGTGTTTAGGCTACATTGGCTTAGAAGAATGGACAGAGACAGCATTGGTGCCTAGCTTGAGGCAAGTAAGGAT GAAGCTTGAACCGGGTCGATCCATGGTTATCTGGTTGGAACCCGATCGTGATTTGGAGAGTCGGAGCCCTGGGGATTGGTTGCCAAGTAGTGTTAGAGTC ATGGTTGATGGGAGGTGA
AA sequence Show only first row Show all	>Lus10008902 pacid=23144262 polypeptide=Lus10008902 locus=Lus10008902.g ID=Lus10008902.BGIv1.0 annot-version=v1.0 MSNALATALKRAQANQRKGCPEQPPQQSLLAVKVELEQLIISILDDPSVSRVMREAKFSSPAVKATIEKSLSSGLSGSGSEPRRMGNEGVKRVVDVAGRA PPIPGLFPRIGTTGFLGTSLESMSPLKAFPTVAIAPVLNRNPVGKTDFCPECKHNYEQELAKHVKKPKDANSESAQQQSLPLWLKNATTEQAGVEPLDQS LTKDHELIQQQKTMALQKKWHDTCLRLHPGHHRSNRGPGRLTISMPSLYNQRNNNLVPCVPKINLTGGYLTLEPKANPSPKQSPKLLTSPPRSPVRTELV LGNHPPKVAAESIPSSKFQISKLLDKLDADEFKKLLKGLMEKVWWQQDAASAVATVITQWKLGSEKRRGSNNVWLLFTGPDRIGKKKMAVALSELVRHSN PVTVHLGFSGREDGGFGRGKTVVDRIVEAVRRNPFSVVVLEDIDEADMVVKGTIKRAMERGRLSDSHGREISLGNVIFILTAEGLEFESSHHALDEKKLA SFVGGGWQLRLSVSGKTAKRRASCNNWLDKRPKKDMRSGLSFDLNEEAGSQNSSDLTVDHEDEQFLSSRLLTPTTNTSATSSSSLPLELLDLLDDSITFK PVDFGAMRRDILKSIIDRASSVIGDANNLELEPDALGKIAGGLCLGYIGLEEWTETALVPSLRQVRMKLEPGRSMVIWLEPDRDLESRSPGDWLPSSVRV MVDGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57710			Double Clp-N motif-containing ...		Lus10008902 [exp]	0	1
AT4G39955			alpha/beta-Hydrolases superfam...		Lus10023147 [exp]	3.5	0.6920
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10033333 [exp]	4.8	0.7009
AT1G53490			RING/U-box superfamily protein...		Lus10005260 [exp]	8.5	0.6571
AT2G39210			Major facilitator superfamily ...		Lus10038682 [exp]	19.7	0.5909
AT2G38910		CPK20	calcium-dependent protein kina...		Lus10012285 [exp]	20.5	0.6543
AT5G27410			D-aminoacid aminotransferase-l...		Lus10035342 [exp]	23.1	0.6880
AT1G29140			Pollen Ole e 1 allergen and ex...		Lus10017940 [exp]	24.2	0.6783
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Lus10017541 [exp]	25.5	0.6715
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024572 [exp]	27.0	0.6665
AT3G54510			Early-responsive to dehydratio...		Lus10043455 [exp]	38.9	0.6661

Compare expression of checked genes

Lus10008902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.