Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57700 483 / 1e-172 BNR/Asp-box repeat family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006994 [exp] 467 / 1e-165 AT5G57700 372 / 4e-128 BNR/Asp-box repeat family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G097100 [exp] 512 / 0 AT5G57700 509 / 0.0 BNR/Asp-box repeat family protein (.1.2.3.4) Potri.006G175161 [exp] 67 / 2e-13 AT5G57700 43 / 1e-05 BNR/Asp-box repeat family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0434 [flax] [poplar] Sialidase PF02012 [flax] [poplar] BNR BNR/Asp-box repeat
Representative CDS sequence Show only first row Show all	>Lus10008903 pacid=23144224 polypeptide=Lus10008903 locus=Lus10008903.g ID=Lus10008903.BGIv1.0 annot-version=v1.0 ATGAGCAAGGGTTGTTCTCCTTGGTCACCATTGAGAGCGGAGTTCACTTTTGTGGCGAATTCTGCACCGTTCAGCAGTTGTCATGCATCTACCATTGTCG AGGTAGAGAAAGGCCACTTTTTGGCTGCCTATTTTGGAGGTACATCAGAAGGAGCTTCTGATGTGAAAATCTGGATACAAACTTACAAGGATGGAGTTTG GCAGGCTCCCATGATTGCTGATGAACAGCCTGGTGTGCCATTGTGGAACCCGGTTCTATTCAAGCTACCATCAGATGAGGTTTTGCTGTTCTACAAAATT GGGCAGGAGGTGCAAAAGTGGAGTGGATGTATGAAGAGATCGTACGATAAAGGGGTTACTTGGACACTAAGGGAACAACTTCCTCCAGGTATATTAGGTC CATCAAAGAACAAGCCTCTCTTGCTCGAAACCGGTTTATTGCTCTGTGGGTCATCGGTCGAAAGCTGGAACTCATGGGGATCGTGGGTTGAGGTTACAGC AGATGCTGGCAAGACATGGAGGAAGTATGGACCGATCTACATCGAGAACCGTTCCCTCAGTGTGATTCAACCTGTACCATACCGGACTACCAAGGGTACG TTGCGTGTTTTGATGCGATCGTTTGATGGAATCGATAGAGTATGCATCTCAGAATCGTTAGATGGTGGTGTGAGCTGGGGGTATGCCAAACCAACTGAAC TTCCTAACCCAAACTCAGGCATAGATGGAGTGAAGCTAAGAGATGGCAGGGTTCTACTTGCATACAACACAGCCTCAAGGGCTGTGCTTAAGGTTGCTGT ATCCGAAGACGAAGGAGATTCCTGGTGCGATGTTCTGACACTAGAAGATCAACAAGGGATGGAGTTCTCATATCCGGCAGTAATCCAGGATAGCGACGGA TTGGTTCACATCACTTACACTTATAAGAGGACACAGATTAAGGTAACAACACAATGGTGTTTGTTGTGTTCTTTGAGAAACAGGATGAATTTAAGTAATG CATGA
AA sequence Show only first row Show all	>Lus10008903 pacid=23144224 polypeptide=Lus10008903 locus=Lus10008903.g ID=Lus10008903.BGIv1.0 annot-version=v1.0 MSKGCSPWSPLRAEFTFVANSAPFSSCHASTIVEVEKGHFLAAYFGGTSEGASDVKIWIQTYKDGVWQAPMIADEQPGVPLWNPVLFKLPSDEVLLFYKI GQEVQKWSGCMKRSYDKGVTWTLREQLPPGILGPSKNKPLLLETGLLLCGSSVESWNSWGSWVEVTADAGKTWRKYGPIYIENRSLSVIQPVPYRTTKGT LRVLMRSFDGIDRVCISESLDGGVSWGYAKPTELPNPNSGIDGVKLRDGRVLLAYNTASRAVLKVAVSEDEGDSWCDVLTLEDQQGMEFSYPAVIQDSDG LVHITYTYKRTQIKVTTQWCLLCSLRNRMNLSNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57700			BNR/Asp-box repeat family prot...		Lus10008903 [exp]	0	1
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10029146 [exp]	1.0	0.9550
AT5G17680			disease resistance protein (TI...		Lus10041078 [exp]	2.8	0.9366
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	4.2	0.9451
AT3G10260			Reticulon family protein (.1.2...		Lus10029822 [exp]	5.1	0.9332
AT3G51000			alpha/beta-Hydrolases superfam...		Lus10041790 [exp]	6.2	0.9301
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10041544 [exp]	6.6	0.9350
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10009274 [exp]	6.6	0.9421
AT3G16230			Predicted eukaryotic LigT (.1....		Lus10037578 [exp]	6.9	0.9296
AT5G53050			alpha/beta-Hydrolases superfam...		Lus10022392 [exp]	8.5	0.9366
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10015824 [exp]	9.3	0.9508

Compare expression of checked genes

Lus10008903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.