Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006993 [exp] 264 / 6e-88 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G267201 [exp] 84 / 1e-17 AT2G20142 61 / 5e-10 Toll-Interleukin-Resistance (TIR) domain family protein (.1) Potri.018G023600 [exp] 76 / 7e-15 AT2G20142 86 / 7e-19 Toll-Interleukin-Resistance (TIR) domain family protein (.1) Potri.001G007501 [exp] 65 / 2e-11 AT2G20142 77 / 2e-15 Toll-Interleukin-Resistance (TIR) domain family protein (.1) Potri.T044600 [exp] 64 / 6e-11 AT4G27220 192 / 7e-51 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145558 [exp] 60 / 1e-09 AT4G27220 188 / 1e-49 NB-ARC domain-containing disease resistance protein (.1) Potri.015G125950 [exp] 45 / 9e-05 AT3G58480 91 / 3e-19 calmodulin-binding family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008904 pacid=23144248 polypeptide=Lus10008904 locus=Lus10008904.g ID=Lus10008904.BGIv1.0 annot-version=v1.0 ATGGGTAACTTAATCACGTCCAGAGCTGCTACTGCAACTGGAAGTACTTCCCGGGAATGCAGGATGGATATTGTATCCCCAAGTGCCCAAGAACGCAGCA ATTTATCGTCTGGTGTTACTGTCAATTATGGGGTTAATTTCTTAATTCAGAGGAATCCTACTATTGCTACTCCTGCAGCAGTGACTGTACGAGGAGATGA CACTTCGCAACCCTTATTGATTGACAGCCAGAAAGCACCCACAAGTGAACAAGTTGCTAACCATACCGATCCAGAGGAAGCCGTTCTGCTTGATGGAGGT CAACAAACCTACACTGATGGAACTGCTACCGGCCACTTTTCAATTGAGGAGGTTCGAAGTTATGCTGCACGCGTAGAGAATATGGAGGGACAAAGTGGAA CCTCAGACACTGTGATGGGACAATATCTGTTTCAATGTCAGAGACAAACAGATCGTTATAAACATCTGTACAGGACTTGCTGCTGTATAAATGCATGCGA AGGTTTCGTGCTCGTCCTCTGTGTCTTGCTCATTGAGATTGCTTCAGCAATTTTTGAACAGTTGGGACTACATTTACCGGGCTTGATAGCGGCTTATCTT GGATTAACTTTTTCCCTACTTGACGTTGCATTATCTGTTGAATGGTGCTACGGTATTCCTCCTCACAGGACATTCGGCTCTGTTCTCGACTACTTCGGAT TAGTATCCGCAATTTGGCAGTGCATTCATTCCACGGTGGGTTACATCTACTTCACGCTAGCAGGCTCTGAGAATCCAATCAAAATGGCCGCAATCATGAT CATCCTTTCCATCTGTCTCCTGCAGAAGATAAGGGATGATGAATTGGTTGTTTCATCATGCTCACAGAAGGAAGAGAGTGTTTCTCAACCTATTATTCCC TCCAGTACTGAGAATTCAGTTGATGCTATTATTACAACTATTGGTAATCCATTGCTCTCCTCTGTGAGAATTGAAGAACTGCAGGCTGAGGAACACCCTT ATACATTTGGGAATATTCAATCCCCTGGTAGTAAGAGCAGCAAGAGCAGCAAGAAGCTCTCGATTCTGAGAACCTTGATGATGTTCTTTTAG
AA sequence Show only first row Show all	>Lus10008904 pacid=23144248 polypeptide=Lus10008904 locus=Lus10008904.g ID=Lus10008904.BGIv1.0 annot-version=v1.0 MGNLITSRAATATGSTSRECRMDIVSPSAQERSNLSSGVTVNYGVNFLIQRNPTIATPAAVTVRGDDTSQPLLIDSQKAPTSEQVANHTDPEEAVLLDGG QQTYTDGTATGHFSIEEVRSYAARVENMEGQSGTSDTVMGQYLFQCQRQTDRYKHLYRTCCCINACEGFVLVLCVLLIEIASAIFEQLGLHLPGLIAAYL GLTFSLLDVALSVEWCYGIPPHRTFGSVLDYFGLVSAIWQCIHSTVGYIYFTLAGSENPIKMAAIMIILSICLLQKIRDDELVVSSCSQKEESVSQPIIP SSTENSVDAIITTIGNPLLSSVRIEELQAEEHPYTFGNIQSPGSKSSKSSKKLSILRTLMMFF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008904 [exp]	0	1
					Lus10027235 [exp]	1.4	0.8252
					Lus10013650 [exp]	3.3	0.8426
					Lus10022938 [exp]	6.2	0.8180
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10040230 [exp]	6.3	0.7642
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10017700 [exp]	6.3	0.8047
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10012414 [exp]	6.9	0.7915
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10041034 [exp]	7.0	0.7896
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10041033 [exp]	7.7	0.7389
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10038672 [exp]	8.5	0.7490
AT5G44960			F-box/RNI-like/FBD-like domain...		Lus10015246 [exp]	10.5	0.7933

Compare expression of checked genes

Lus10008904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.