Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28020 257 / 8e-84 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006992 [exp] 462 / 7e-164 AT4G28020 452 / 2e-159 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G096900 [exp] 326 / 3e-110 AT4G28020 435 / 2e-152 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01980 [flax] [poplar] TrmO tRNA-methyltransferase O
Representative CDS sequence Show only first row Show all	>Lus10008905 pacid=23144211 polypeptide=Lus10008905 locus=Lus10008905.g ID=Lus10008905.BGIv1.0 annot-version=v1.0 ATGGGTTCCGACCAGCGGTCGAAATGGTTGATACCCATCGTAACTGTAGCGCTTGCAGCTTTCTCTGCCTCCGCAGCCATATCCTTTCATCGCTGTAGAA AGAAATCGGAAGAGTTGGAATCCAAGGTGGAAGAGCTTGAGCTTTCTCTCAAATCGTCCTTTGAAAAATCCGCTGCTGAGAGGCAAGGTCGAATTCGAGC TCAACAGACGTTGAGGAAAGCTTTAGCTGAGCAGAAGTCTGAGAATTTGCAGCATAATTCTTACCCGATGGCGCCAATTGGTACTGTTCAGTCTTGCTTC TCAACTAGAAATGGGACTCCAAGGCAACCTTTGGTTGTACCAATGGCTAGAGCATGCTTAACGTTTGATCCATCTAGGGTTCCTCTGGCATCACTTGAAG CTGTGGAAGAACCATCTAGATCAAAGTTCAAGGCCAAGGTGGAAGCTGTACAAGGAAACATGGTTCTGCTATCTGGTGTTGATCTAGTTGATGGCACTCC AGTTCTTGACATCAAACCTTATCTACCATACTGCGACAGCATCACTGAAGCATCAGTGCCAAAGTGGGTAATGGAGGACAACATGCTAGCCGTTGCCTCT GTTAGCTTCTCGGATGACTTCACTTCCTCCCTCGACGATTGTTGGTCGAGGAAAGGAAAGAAGTCACTGTATGCATCTGCAGAAGAGCTGCAACATCTGA TCAAACAGGTTCTTTCGTGGGACATTCGGTCTGTATCGCAACGGAACCAACCTCACAATGCTGAAGGACACAACCCAGATGAAAAAAGCAATGACCACGA TGACGATCGTGTGGATGGTGAAAGCCGATCTGATTCGACAGACATAATCTATCATCTTGTCTTGGAGGGAATTGACTTCGCATACAGAATCGACGAAACT GGCAATGTGGTTGTTGACAAAGCTGCTGTTGAGAACTCCTCGCCCGACATCACAAACGGTGAATTACGAAATCGAGCTAGGTTGTTTCATCCAAGCTAA
AA sequence Show only first row Show all	>Lus10008905 pacid=23144211 polypeptide=Lus10008905 locus=Lus10008905.g ID=Lus10008905.BGIv1.0 annot-version=v1.0 MGSDQRSKWLIPIVTVALAAFSASAAISFHRCRKKSEELESKVEELELSLKSSFEKSAAERQGRIRAQQTLRKALAEQKSENLQHNSYPMAPIGTVQSCF STRNGTPRQPLVVPMARACLTFDPSRVPLASLEAVEEPSRSKFKAKVEAVQGNMVLLSGVDLVDGTPVLDIKPYLPYCDSITEASVPKWVMEDNMLAVAS VSFSDDFTSSLDDCWSRKGKKSLYASAEELQHLIKQVLSWDIRSVSQRNQPHNAEGHNPDEKSNDHDDDRVDGESRSDSTDIIYHLVLEGIDFAYRIDET GNVVVDKAAVENSSPDITNGELRNRARLFHPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28020			unknown protein		Lus10008905 [exp]	0	1
AT5G52280			Myosin heavy chain-related pro...		Lus10029303 [exp]	3.9	0.7784
AT4G23330			unknown protein		Lus10024630 [exp]	4.5	0.6912
AT3G06080		TBL10	TRICHOME BIREFRINGENCE-LIKE 10...		Lus10034039 [exp]	6.5	0.6684
AT3G02645			Plant protein of unknown funct...		Lus10015084 [exp]	14.7	0.6858
AT1G24530			Transducin/WD40 repeat-like su...		Lus10011402 [exp]	16.1	0.7211
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10043137 [exp]	17.4	0.6521
					Lus10026124 [exp]	19.1	0.6910
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10035828 [exp]	19.6	0.6712
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10017825 [exp]	24.4	0.6844
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10037392 [exp]	26.2	0.6117

Compare expression of checked genes

Lus10008905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.