Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31955 605 / 0 CNX2 cofactor of nitrate reductase and xanthine dehydrogenase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006989 [exp] 790 / 0 AT2G31955 603 / 0.0 cofactor of nitrate reductase and xanthine dehydrogenase 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G024100 [exp] 632 / 0 AT2G31955 610 / 0.0 cofactor of nitrate reductase and xanthine dehydrogenase 2 (.1.2.3) Potri.001G230604 [exp] 477 / 1e-168 AT2G31955 458 / 3e-161 cofactor of nitrate reductase and xanthine dehydrogenase 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF04055 [flax] [poplar] Radical_SAM Radical SAM superfamily CL0036 [flax] [poplar] PF06463 [flax] [poplar] Mob_synth_C Molybdenum Cofactor Synthesis C
Representative CDS sequence Show only first row Show all	>Lus10008908 pacid=23144215 polypeptide=Lus10008908 locus=Lus10008908.g ID=Lus10008908.BGIv1.0 annot-version=v1.0 ATGATTACGGCGACGATGAGGCGGCAACTGGCCGCTAGAACTAGACTCACTAACTGGCATTTCCGATTCACCAACTTCACTTTCTCCCAGGTCAATTCTC AACAACATGGAAGCCTTTGTGGTGGTGGTACCTTCTTCAACACCTATGCAACAACCTCTTGTGCTGCTAAGCTTCAAGATGATCATCATCGTCCAGATGC TAATAATCTCGTTTCCAATATGTTGGTTGATTCATTTGGAAGGATGCACACTTACCTCAGAATCTCGTTGACCGAGCGCTGCAACCTACGCTGTCAATAC TGCATGCCATCCGAAGGTGTGGAGCTCACTCCTTCCCCTCAGCTCCTCACACTGGACGAGATTGTTCGGTTGGCCGGTCTCTTTGTCTCTTCCGGAGTCA ACAAAATTCGCCTGACTGGTGGTGAGCCAACCGTTAGGAAAGATATTGAGGAAATATGCTCCCAATTGTCCAGTCTGAAAGGTCTCAAGACACTTGCTAT TACCACCAACGGACTTACCCTCGCCAAGAAGCTTCCCAGCCTCAAGGCAAATGGACTTACTGCGGTTAACATTAGTCTGGACACGTTGGTACCGGCCAAG TTCGAGTTCTTGACCAGGCGTAAAGGGCATCAAAGGGTTGTGGAATCGATTCATGCTGCTGTTGAGTGTGGCTACAATCCTGTCAAAGTGAATTGTGTGG TCATGCGTGGCTTGAACGATGACGAGATCTGTGATTTTGTGGAGTTGACCCATGACAAACCAATCAATGTCCGGTTCATTGAGTTCATGCCCTTTGATGG AAATGTTTGGAATGTGAAAAAACTTGTTCCTTACTCGGAAATGTTGGATAGAGTGATGAAGCAGTTTCCAAGTCTAGAGCGAATTCAAGATCACCCTACT GAAACAGCCAAGAACTTCAAGATAGAGGGGCATCTCGGCACTGTTTCCTTTATCACGTCAATGACTGAGCACTTTTGTGCTGGGTGCAACAGGCTGAGAC TTTTAGCCGATGGGAATTTCAAAGTATGCCTTTTTGGCCCTTCAGAGGTTAGCTTGAGAGATCCCCTTCGCAATGGTTCTGATGAAGATGAGCTTAGAGA AATCATTGGCGCCGCGGTGAAGAGGAAAAAAGCTTCGCATGCCGGAATGTTTGACCTTGCGAAGACGGCAAATAGACCCATGATACACATTGGTGGCTGA
AA sequence Show only first row Show all	>Lus10008908 pacid=23144215 polypeptide=Lus10008908 locus=Lus10008908.g ID=Lus10008908.BGIv1.0 annot-version=v1.0 MITATMRRQLAARTRLTNWHFRFTNFTFSQVNSQQHGSLCGGGTFFNTYATTSCAAKLQDDHHRPDANNLVSNMLVDSFGRMHTYLRISLTERCNLRCQY CMPSEGVELTPSPQLLTLDEIVRLAGLFVSSGVNKIRLTGGEPTVRKDIEEICSQLSSLKGLKTLAITTNGLTLAKKLPSLKANGLTAVNISLDTLVPAK FEFLTRRKGHQRVVESIHAAVECGYNPVKVNCVVMRGLNDDEICDFVELTHDKPINVRFIEFMPFDGNVWNVKKLVPYSEMLDRVMKQFPSLERIQDHPT ETAKNFKIEGHLGTVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRNGSDEDELREIIGAAVKRKKASHAGMFDLAKTANRPMIHIGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31955		CNX2	cofactor of nitrate reductase ...		Lus10008908 [exp]	0	1
					Lus10032317 [exp]	1.7	0.8387
AT3G52780		ATPAP20, PAP20	Purple acid phosphatases super...		Lus10017057 [exp]	3.3	0.8054
AT1G18700			DNAJ heat shock N-terminal dom...		Lus10021658 [exp]	5.7	0.8093
AT3G14150			Aldolase-type TIM barrel famil...		Lus10013174 [exp]	8.0	0.8370
AT3G22550			Protein of unknown function (D...		Lus10042606 [exp]	10.2	0.8209
AT4G31340			myosin heavy chain-related (.1...		Lus10020166 [exp]	10.4	0.7693
AT1G63270		ABCI1, ATNAP10	ATP-binding cassette I1, non-i...		Lus10006727 [exp]	11.3	0.8511
AT5G20060			alpha/beta-Hydrolases superfam...		Lus10043294 [exp]	15.1	0.8042
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10039769 [exp]	19.9	0.8388
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Lus10004118 [exp]	24.2	0.8163

Compare expression of checked genes

Lus10008908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.