Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24920 62 / 1e-12 ATGDU5 glutamine dumper 5 (.1) AT4G25760 61 / 4e-12 ATGDU2 glutamine dumper 2 (.1) AT5G57685 60 / 2e-11 LSB1, ATGDU3 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) AT4G31730 56 / 3e-10 ATGDU1, GDU1 glutamine dumper 1 (.1) AT2G24762 55 / 1e-09 ATGDU4 glutamine dumper 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006986 [exp] 172 / 6e-55 AT5G57685 124 / 2e-36 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10006987 [exp] 117 / 2e-33 AT5G57685 125 / 2e-37 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10019985 [exp] 102 / 2e-27 AT5G57685 123 / 3e-36 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10019986 [exp] 102 / 2e-27 AT5G57685 125 / 7e-37 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10015513 [exp] 97 / 2e-25 AT5G57685 124 / 2e-36 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10026911 [exp] 74 / 2e-16 AT4G31730 125 / 6e-37 glutamine dumper 1 (.1) Lus10020107 [exp] 64 / 5e-13 AT4G31730 122 / 1e-35 glutamine dumper 1 (.1) Lus10008909 [exp] 54 / 5e-10 AT5G57685 87 / 2e-23 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G173901 [exp] 90 / 6e-23 AT5G57685 89 / 8e-23 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Potri.018G013600 [exp] 76 / 3e-17 AT4G25760 79 / 2e-19 glutamine dumper 2 (.1) Potri.006G267900 [exp] 69 / 7e-15 AT5G57685 83 / 2e-20 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Potri.004G108800 [exp] 38 / 0.0009 AT5G24920 57 / 2e-11 glutamine dumper 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008910 pacid=23144253 polypeptide=Lus10008910 locus=Lus10008910.g ID=Lus10008910.BGIv1.0 annot-version=v1.0 ATGGCAGCCGCAAGAGAACCCATCAACCTAACTCCGGCGGCGGCCACGTCGGCAGCAGATAGGTCGCCGTGGCATTCCCCTGTTCCGTACTTGTTCGGCG GACTAGCAGCCATGTTGGGGCTGATCGCCTTCGCGCTGCTGATCCTCGCTTGCTCCTACTGGAAGCTCTCTGGCCACCTTGAGAACGGCGACAACGAGAG GGATCTAGAAGCAGGGGAAGAAACAGAGGATGAGAAGAAAGGAAAGAAACCGTACGAGGAGAAGGTTCTGGTTATAATGGCTGGACAGTTAAAGCCGACT TTTCTGGCGACGCCGGTCTCGAACTGCAGCAGAACGTCGTCGTTTGGGGACAGCGAGAAGACTTGTCGATGTGGGGAGAAATTGGAAGGTGGAAAACAGG GGATTGGTGAGGAAGAAGAAGAAGAAGAAGAAGAACAGAGTGGAAACAGGGGAAGTTTGGGAAATGATGAGCTGCCGCCATCGGCGGCGGGGGGGGGGGG GGGGGGGGGGGGTGTGTGTGGGGGGGGGGTGGGGGTGAGTGCACGTCAGCTTTGTTGTTTGTGTTAG
AA sequence Show only first row Show all	>Lus10008910 pacid=23144253 polypeptide=Lus10008910 locus=Lus10008910.g ID=Lus10008910.BGIv1.0 annot-version=v1.0 MAAAREPINLTPAAATSAADRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGHLENGDNERDLEAGEETEDEKKGKKPYEEKVLVIMAGQLKPT FLATPVSNCSRTSSFGDSEKTCRCGEKLEGGKQGIGEEEEEEEEEQSGNRGSLGNDELPPSAAGGGGGGGGVCGGGVGVSARQLCCLC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10008910 [exp]	0	1
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10016410 [exp]	5.5	0.8040
					Lus10003852 [exp]	8.1	0.8531
AT4G37250			Leucine-rich repeat protein ki...		Lus10014098 [exp]	11.6	0.7643
AT5G45800		MEE62	maternal effect embryo arrest ...		Lus10007287 [exp]	22.2	0.7468
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Lus10022675 [exp]	24.0	0.8000
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026329 [exp]	26.4	0.7711
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10040592 [exp]	31.3	0.7440
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10040217 [exp]	33.0	0.7990
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10006542 [exp]	37.8	0.7858
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10013676 [exp]	75.5	0.7773

Compare expression of checked genes

Lus10008910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.