Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71140 400 / 7e-136 MATE efflux family protein (.1) AT1G15150 380 / 8e-128 MATE efflux family protein (.1) AT1G15160 374 / 1e-125 MATE efflux family protein (.1) AT1G15170 360 / 3e-120 MATE efflux family protein (.1) AT1G66760 355 / 3e-118 MATE efflux family protein (.1.2) AT2G04080 354 / 7e-118 MATE efflux family protein (.1) AT2G04040 351 / 7e-117 ATDTX1 detoxification 1, MATE efflux family protein (.1) AT2G04100 345 / 4e-114 MATE efflux family protein (.1) AT1G64820 345 / 4e-114 MATE efflux family protein (.1) AT2G04070 343 / 1e-113 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009132 [exp] 470 / 3e-163 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10018136 [exp] 397 / 3e-134 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10042732 [exp] 392 / 8e-133 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10029694 [exp] 389 / 4e-131 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10018135 [exp] 373 / 2e-125 AT1G15170 524 / 0.0 MATE efflux family protein (.1) Lus10018134 [exp] 382 / 3e-123 AT1G15170 542 / 0.0 MATE efflux family protein (.1) Lus10028540 [exp] 374 / 2e-120 AT1G15170 537 / 0.0 MATE efflux family protein (.1) Lus10009140 [exp] 352 / 1e-116 AT1G64820 560 / 0.0 MATE efflux family protein (.1) Lus10028504 [exp] 350 / 3e-116 AT1G64820 556 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G093400 [exp] 475 / 2e-165 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.004G094700 [exp] 442 / 4e-152 AT2G04100 425 / 3e-145 MATE efflux family protein (.1) Potri.010G116900 [exp] 413 / 8e-141 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.017G120500 [exp] 379 / 8e-128 AT2G04100 468 / 3e-162 MATE efflux family protein (.1) Potri.010G117000 [exp] 379 / 5e-127 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.008G126500 [exp] 378 / 5e-127 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.017G120400 [exp] 374 / 2e-125 AT2G04100 508 / 3e-178 MATE efflux family protein (.1) Potri.004G094900 [exp] 362 / 5e-121 AT1G71140 503 / 3e-176 MATE efflux family protein (.1) Potri.017G120600 [exp] 355 / 2e-118 AT1G66760 468 / 2e-162 MATE efflux family protein (.1.2) Potri.004G094800 [exp] 340 / 5e-113 AT2G04100 479 / 2e-167 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10008911 pacid=23175172 polypeptide=Lus10008911 locus=Lus10008911.g ID=Lus10008911.BGIv1.0 annot-version=v1.0 ATGGTCACTACGATCAATGCCGAAGAGCAAGGAGCGAAAATCTTCGCGACGACATCGCGCAAGGACTTCACCAACGAACTAAAGCGAATCGCCCGCATAG CCGGCCCCATGATCGCAGTAATGGCACTTCAGTACTTACAACAAACAGTGTCCATCGTAATAGTGGGGCACATCAGCCAGCTGGCGCTCACCACCGTCGG GATCGCCACCGCCCTCACCAACGTAACCGGATACAGTGTTCTGTACGGGATGACCGGCGGGCTGTCCACCCTCTGCGGCCAGGCTTACGGCGCCGGTCAG TACAAGAAGCTCGGGACCTACGCTTACAGCGGCATCATCTCCTTATTCCTGATGTGCCCTCCAATCTGCCTGCTTTGGGCCTTCACGGGCCGGCTTCTCC GGGTCACGGGCCAGGACCCGGTCGTTGCTGACGGGGCGCGCGACTTTTGTCTTTGGTCCGTTATCGGGCTGGCGGGGACGGCTGTGGTGGGCCCGCTGAC GAGGTTCTTGCAAGCGCAGAGCGTGGTGGTCCCCATGCTCCTGGCTTCGGCGATAGCGTTTTGTCTGCACGCGCTGATGAGCTGGATCCTCGCGTTTAAG GTGAGAATGGGGGACGCCAGCGTGGCGGTGGCGTTCGGGATGTCCACGTGGGTGAACGCGGCGGCGCTTGCGATTTTCGTGAAGTTTTCCGGCAAGTTTA AGGAGACTCGTGCGCCGTTTACGTGGAGTGCTTTTGGATGTATACCTGAATTTCTCCGACTTGGGTTGCCTGCTGCTGTTATGGTTTGCCTGAAATGGTG GTCTATGGAGGTACTGACTCTACTTTCCGGCCATCTTCCCGATCCTCGATTGCAGACATCGGTTCTCTCGGTGAGTCTGACAATGACTACGTTGCATTTG ACAATCCCATTGAGTCTAGGAGTTGCAGTCAGTACGCGGGTAGCGAACGAGCTAGGAGCAGGGAACCCGAGATCAGCAAGATTAGCAGTAGTGGTGGCGG TGTTCATTGCAGTGGTGGAATCATCGATAGTGAGTATTGCTCTGTTCTTTGCAAGAGATGTGGTGGGTTATGCTTACAGCAACGACACTCAAGTTGTGAA GCACATTTCGACCATCATTCCACTAATCTGCGTATTCATCGTCATGGACAGCCTCCAAGGAGTCCTCTCTGGGACAGCAACAGGTTGCGGGTGGCAGAGA GCTGGAGTGTTCATGAACATAGGAGCATTCTACTTGGTTGGGCTTCCACTGGGCCTATCCCTTGGATTTTCAGCTCATCTGAGAAGTACTGGGTTCTGGA TAGGGATAGTTGCAGGGTCTCTGGTTCAAGCTTCTCTTCTCTCCATCTTCACCTGTTTCCTAGACTGGAACAGGCAGGCAACCAAGGCAAGGGAGAGGGT AAATGGTAACAACTGA
AA sequence Show only first row Show all	>Lus10008911 pacid=23175172 polypeptide=Lus10008911 locus=Lus10008911.g ID=Lus10008911.BGIv1.0 annot-version=v1.0 MVTTINAEEQGAKIFATTSRKDFTNELKRIARIAGPMIAVMALQYLQQTVSIVIVGHISQLALTTVGIATALTNVTGYSVLYGMTGGLSTLCGQAYGAGQ YKKLGTYAYSGIISLFLMCPPICLLWAFTGRLLRVTGQDPVVADGARDFCLWSVIGLAGTAVVGPLTRFLQAQSVVVPMLLASAIAFCLHALMSWILAFK VRMGDASVAVAFGMSTWVNAAALAIFVKFSGKFKETRAPFTWSAFGCIPEFLRLGLPAAVMVCLKWWSMEVLTLLSGHLPDPRLQTSVLSVSLTMTTLHL TIPLSLGVAVSTRVANELGAGNPRSARLAVVVAVFIAVVESSIVSIALFFARDVVGYAYSNDTQVVKHISTIIPLICVFIVMDSLQGVLSGTATGCGWQR AGVFMNIGAFYLVGLPLGLSLGFSAHLRSTGFWIGIVAGSLVQASLLSIFTCFLDWNRQATKARERVNGNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71140			MATE efflux family protein (.1...		Lus10008911 [exp]	0	1
AT3G06880			Transducin/WD40 repeat-like su...		Lus10023666 [exp]	6.0	0.8172
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008212 [exp]	8.0	0.8512
AT1G17810		BETA-TIP	beta-tonoplast intrinsic prote...		Lus10040652 [exp]	10.0	0.8489
AT5G38200			Class I glutamine amidotransfe...		Lus10009152 [exp]	11.2	0.8159
AT1G51340			MATE efflux family protein (.1...		Lus10016412 [exp]	12.8	0.8005
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10019711 [exp]	13.4	0.8439
AT4G16563			Eukaryotic aspartyl protease f...		Lus10028941 [exp]	15.2	0.7667
AT4G16563			Eukaryotic aspartyl protease f...		Lus10007466 [exp]	16.1	0.8410
AT5G27260			unknown protein		Lus10007133 [exp]	16.3	0.8281
AT3G07200			RING/U-box superfamily protein...		Lus10018271 [exp]	19.5	0.6894

Compare expression of checked genes

Lus10008911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.