Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60890 58 / 2e-12 ZPR2 LITTLE ZIPPER 2, protein binding (.1.2) AT2G45450 40 / 4e-05 ZPR1 LITTLE ZIPPER 1, protein binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028902 [exp] 175 / 1e-58 AT3G60890 59 / 1e-12 LITTLE ZIPPER 2, protein binding (.1.2) Lus10006673 [exp] 100 / 8e-29 AT3G60890 47 / 4e-08 LITTLE ZIPPER 2, protein binding (.1.2) Lus10007017 [exp] 88 / 3e-24 AT3G60890 48 / 3e-08 LITTLE ZIPPER 2, protein binding (.1.2) Lus10017055 [exp] 45 / 2e-07 AT3G52770 77 / 5e-20 LITTLE ZIPPER 3, protein binding (.1) Lus10021375 [exp] 45 / 2e-07 AT3G52770 77 / 3e-20 LITTLE ZIPPER 3, protein binding (.1) Lus10014188 [exp] 43 / 9e-07 AT3G52770 72 / 1e-18 LITTLE ZIPPER 3, protein binding (.1) Lus10022725 [exp] 42 / 1e-06 AT3G52770 73 / 5e-19 LITTLE ZIPPER 3, protein binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117200 [exp] 111 / 1e-33 AT3G60890 63 / 4e-14 LITTLE ZIPPER 2, protein binding (.1.2) Potri.001G114900 [exp] 96 / 2e-27 AT3G60890 57 / 1e-11 LITTLE ZIPPER 2, protein binding (.1.2) Potri.014G071200 [exp] 65 / 5e-15 AT3G60890 62 / 1e-13 LITTLE ZIPPER 2, protein binding (.1.2) Potri.002G149600 [exp] 60 / 5e-13 AT3G60890 65 / 1e-14 LITTLE ZIPPER 2, protein binding (.1.2) Potri.006G083201 [exp] 47 / 1e-07 AT3G52770 54 / 2e-10 LITTLE ZIPPER 3, protein binding (.1) Potri.010G237600 [exp] 38 / 5e-05 AT3G52770 49 / 7e-10 LITTLE ZIPPER 3, protein binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008913 pacid=23175183 polypeptide=Lus10008913 locus=Lus10008913.g ID=Lus10008913.BGIv1.0 annot-version=v1.0 ATGCAACATCCCAAGAAGCCTAAACTTCAAGTCATTGGGCTCACCAGAAACAGGAGAAGGTGTGGTGAGGGAACTGGTGAGAAGGAAATGGAGATTAAGA ACTTGAAGCTGTACTTGGAAAACCAAACCATCTTAGAAGAGAATGAGAAGTTGCGGCAGAAAGCGTACCTTCTTCACAGGGAGAATTTAGTCTTGATGAA GGAGTTTCAAGAGAAGTTCCCTCATTTCGATCGCTTCTCCGCGGCTCTGTTTATTCTGTACAAATACTAG
AA sequence Show only first row Show all	>Lus10008913 pacid=23175183 polypeptide=Lus10008913 locus=Lus10008913.g ID=Lus10008913.BGIv1.0 annot-version=v1.0 MQHPKKPKLQVIGLTRNRRRCGEGTGEKEMEIKNLKLYLENQTILEENEKLRQKAYLLHRENLVLMKEFQEKFPHFDRFSAALFILYKY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Lus10008913 [exp]	0	1
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10013454 [exp]	1.7	0.9773
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10014677 [exp]	3.0	0.9739
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10018208 [exp]	3.5	0.9681
AT3G27200			Cupredoxin superfamily protein...		Lus10022350 [exp]	3.5	0.9756
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Lus10028902 [exp]	5.3	0.9663
AT2G40370		LAC5	laccase 5 (.1)		Lus10017426 [exp]	7.1	0.9525
AT4G09990			Protein of unknown function (D...		Lus10005829 [exp]	8.4	0.9675
AT1G21510			unknown protein		Lus10028651 [exp]	11.0	0.9594
AT2G04850			Auxin-responsive family protei...		Lus10001736 [exp]	11.7	0.9675
AT4G39230			NmrA-like negative transcripti...		Lus10026348 [exp]	12.2	0.9537

Compare expression of checked genes

Lus10008913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.