Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22840 453 / 5e-156 Sodium Bile acid symporter family (.1) AT4G12030 443 / 4e-152 BAT5, BASS5 BILE ACID:SODIUM SYMPORTER FAMILY PROTEIN 5, bile acid transporter 5 (.1.2) AT3G25410 206 / 5e-60 Sodium Bile acid symporter family (.1) AT4G22830 185 / 3e-55 unknown protein AT2G26900 174 / 2e-48 BASS2 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) AT1G78560 139 / 7e-36 Sodium Bile acid symporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028901 [exp] 1036 / 0 AT4G22840 464 / 4e-160 Sodium Bile acid symporter family (.1) Lus10025862 [exp] 189 / 9e-54 AT3G25410 542 / 0.0 Sodium Bile acid symporter family (.1) Lus10038237 [exp] 188 / 2e-53 AT3G25410 544 / 0.0 Sodium Bile acid symporter family (.1) Lus10007016 [exp] 169 / 2e-46 AT2G26900 610 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Lus10006672 [exp] 162 / 9e-44 AT2G26900 603 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Lus10005565 [exp] 148 / 7e-39 AT1G78560 549 / 0.0 Sodium Bile acid symporter family (.1) Lus10013700 [exp] 150 / 5e-38 AT1G78560 554 / 0.0 Sodium Bile acid symporter family (.1) Lus10035803 [exp] 135 / 3e-34 AT1G78560 224 / 5e-69 Sodium Bile acid symporter family (.1) Lus10036583 [exp] 133 / 1e-33 AT2G26900 229 / 4e-71 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117300 [exp] 539 / 0 AT4G22840 500 / 6e-177 Sodium Bile acid symporter family (.1) Potri.001G114800 [exp] 217 / 2e-67 AT4G22830 187 / 1e-60 unknown protein Potri.014G178000 [exp] 186 / 9e-53 AT3G25410 486 / 5e-171 Sodium Bile acid symporter family (.1) Potri.018G074400 [exp] 167 / 1e-45 AT2G26900 554 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Potri.003G008700 [exp] 147 / 2e-38 AT1G78560 238 / 2e-74 Sodium Bile acid symporter family (.1) Potri.011G103200 [exp] 140 / 2e-36 AT1G78560 496 / 9e-176 Sodium Bile acid symporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF01758 [flax] [poplar] SBF Sodium Bile acid symporter family CL0064 [flax] [poplar] PF10693 [flax] [poplar] DUF2499 Protein of unknown function (DUF2499)
Representative CDS sequence Show only first row Show all	>Lus10008914 pacid=23175161 polypeptide=Lus10008914 locus=Lus10008914.g ID=Lus10008914.BGIv1.0 annot-version=v1.0 ATGACCCTTACCGCCCGGTGGTATCTGCAACCTCAAACCTTCCACAAGCCTCCGTCTCCCCGTCGACAATACACTACCCACTTCCCCAAATGTAGCAATC AGCTCTTCCCTGCTTTCCCTCGCAGTTCCCTCGCCAATTTTTCAGCTGAAAGTTCGAGACTTTTGGTGATCAAATGTGTTTCTGATAAGTTATCGGGATC CTTTGAGCCGGATTCCAGAAATGGCGATCAAAGTCAGACGATTGATAAGAGAAAAGTCTCTCTTGCCGACATTCTTAAGCAAGCGAATTCGCTACTGCCT CATGTAGTCCTTGCTAGTACCTTGGTGGCACTTGTCTATCCTCCTTCTTTCACCTGGTTCACCACCAGGTACTATGCTCCTGCGTTAGGGTTCTTAATGT TTGCAGTTGGACTTAACTCGAACGAAAAGGACTTTGTTGAAGCATTCAGCAGGCCAACAGCCATCTTGGCTGGTTACATTGGTCAATTTGTGGTGAAGCC TATTCTTGGATATTTATTCGGAGTACTTTCAGTTTCAATGTTTGGCCTTCCCACTGCGATCGGTGCTGGGATTATGTTGGTATCTTGTGTAAGCGGGGCT CAACTTTCGAACTATGCTACTTTTCTTACTGATCCATCTCTGGCTCCTCTAAGCATAGTCATGACTTCATTGTCCACTGCAACTGCTGTGTTCGTAACGC CTTTACTGTCTCTCTTACTCATCGGCAAGAGACTCCCTGTCGATGTAAAAGGAATGGTGTCCAGCATCACGCAGATTGTAGTTGCTCCTATTGCTGCAGG CTTGTTTCTGAACAGGTTCTTTCCACCGATATCAAGTGCGATTCGGCCATTTTTGCCTCCTCTCTCCGTGATCGTAACAGCATGCTGTGTCGGAGCTCCT CTCGCGATCAATGTGGAGTCGGTCATGTCCCCATTTGGTGTAACCATATTGTCACTCATAATCGCATTTCACGTGTCGGCATTTGTTATTGGGTATACCT TTACTGGTTTCGCCTTCAACAATGCATCGGATTTGAAGCCCCTGCAAAGAACCATATCATACGAGACGGGAAGGCAGAGTAGTCTACTGGCCCTTGCACT TGCTAACAAGTTTTTCAAAGATCCGTTAGTTGCCGTGCCTCCAGCTGTCTCTCATCCTTCCATCCCGAAAAGAAGGATCAAACGCTCGAAATCAATGGCC TTCTCTGCAACAACAACTGCCTTATCATTTTTCTCTTCCAAATCGTTTCCTTCTCACAAATCTTCCCTTACCCTTCTCGATTCTCATCCTCCTTCATCTA TCTGTACTCCGACCTCTCTTCGAACTCCACCGCTTGCCGCGCTGAACTCCGCAAAATGTGGCGTCGCCGGTCTAGTCGGAGCCGGTCTGTTTCTGACCGT TATCGGACCCGCCTCCGCCGTCAGCTTACCGTTGGTGGGTGAGCTGGCGGAGCCCGCCAACGCCCTCTCTTTGCCCACGTGGGCAGTCCACGTTTCCAGT GTCGTCGAGTGGGTCACAGCAATGGCTCTGGTGTGGCAGTATGGGGAAAAATCTGGGTTTGAAACCTGGAAAGGACTCTCTTGGGGGATGGTACCTTTAC TGGGTGGAGCTATGTGTGCATGCACATGGCATTTCTTCTACAATGCCGAGTCTCTAGAGGTACTGGTGGCTATTCAAGCTGCATTGACAGTTATTGGTAA TGCAACAATGTGCTTTGCTGCATACCGTATTTTTAGAGCATCGCAGGAAGGCGCTAAGGATCTTTGA
AA sequence Show only first row Show all	>Lus10008914 pacid=23175161 polypeptide=Lus10008914 locus=Lus10008914.g ID=Lus10008914.BGIv1.0 annot-version=v1.0 MTLTARWYLQPQTFHKPPSPRRQYTTHFPKCSNQLFPAFPRSSLANFSAESSRLLVIKCVSDKLSGSFEPDSRNGDQSQTIDKRKVSLADILKQANSLLP HVVLASTLVALVYPPSFTWFTTRYYAPALGFLMFAVGLNSNEKDFVEAFSRPTAILAGYIGQFVVKPILGYLFGVLSVSMFGLPTAIGAGIMLVSCVSGA QLSNYATFLTDPSLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSITQIVVAPIAAGLFLNRFFPPISSAIRPFLPPLSVIVTACCVGAP LAINVESVMSPFGVTILSLIIAFHVSAFVIGYTFTGFAFNNASDLKPLQRTISYETGRQSSLLALALANKFFKDPLVAVPPAVSHPSIPKRRIKRSKSMA FSATTTALSFFSSKSFPSHKSSLTLLDSHPPSSICTPTSLRTPPLAALNSAKCGVAGLVGAGLFLTVIGPASAVSLPLVGELAEPANALSLPTWAVHVSS VVEWVTAMALVWQYGEKSGFETWKGLSWGMVPLLGGAMCACTWHFFYNAESLEVLVAIQAALTVIGNATMCFAAYRIFRASQEGAKDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22840			Sodium Bile acid symporter fam...		Lus10008914 [exp]	0	1
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10017051 [exp]	1.4	0.7975
AT4G03020			transducin family protein / WD...		Lus10012779 [exp]	6.0	0.7751
AT4G26450		WIP1	unknown protein		Lus10027095 [exp]	6.3	0.7258
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031798 [exp]	8.8	0.7686
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10012139 [exp]	12.0	0.6769
AT1G69640		SBH1	sphingoid base hydroxylase 1 (...		Lus10037183 [exp]	12.2	0.7439
AT2G26790			Pentatricopeptide repeat (PPR)...		Lus10020298 [exp]	12.4	0.6888
AT4G17250			unknown protein		Lus10004355 [exp]	14.0	0.7050
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10015664 [exp]	17.0	0.7451
AT5G50180			Protein kinase superfamily pro...		Lus10035233 [exp]	21.2	0.6999

Compare expression of checked genes

Lus10008914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.