Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12450 265 / 3e-88 SNARE associated Golgi protein family (.1) AT4G22850 256 / 2e-84 SNARE associated Golgi protein family (.1.2) AT4G12000 248 / 2e-81 SNARE associated Golgi protein family (.1) AT2G02370 187 / 3e-57 SNARE associated Golgi protein family (.1.2) AT1G22850 56 / 7e-09 SNARE associated Golgi protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028900 [exp] 424 / 2e-150 AT1G12450 348 / 9e-121 SNARE associated Golgi protein family (.1) Lus10007018 [exp] 355 / 3e-123 AT1G12450 364 / 6e-127 SNARE associated Golgi protein family (.1) Lus10006674 [exp] 350 / 3e-121 AT1G12450 365 / 4e-127 SNARE associated Golgi protein family (.1) Lus10012163 [exp] 184 / 3e-56 AT2G02370 401 / 4e-141 SNARE associated Golgi protein family (.1.2) Lus10007583 [exp] 164 / 3e-48 AT2G02370 399 / 2e-140 SNARE associated Golgi protein family (.1.2) Lus10021942 [exp] 42 / 0.0002 AT5G19070 343 / 9e-120 SNARE associated Golgi protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117400 [exp] 302 / 1e-102 AT1G12450 343 / 1e-118 SNARE associated Golgi protein family (.1) Potri.001G114600 [exp] 291 / 2e-98 AT1G12450 317 / 3e-108 SNARE associated Golgi protein family (.1) Potri.001G078700 [exp] 177 / 2e-53 AT2G02370 390 / 2e-136 SNARE associated Golgi protein family (.1.2) Potri.003G151800 [exp] 165 / 8e-49 AT2G02370 377 / 2e-131 SNARE associated Golgi protein family (.1.2) Potri.013G099600 [exp] 56 / 1e-08 AT1G22850 305 / 6e-102 SNARE associated Golgi protein family (.1) Potri.019G071900 [exp] 56 / 1e-08 AT1G22850 330 / 8e-113 SNARE associated Golgi protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [flax] [poplar] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Lus10008915 pacid=23175144 polypeptide=Lus10008915 locus=Lus10008915.g ID=Lus10008915.BGIv1.0 annot-version=v1.0 ATGCCGTATATAAATGAAGATGACAGCTTGGTCTCTGAGCTGAGGATGAGAGTGGATGACAATGACGGTGTTGATAAGAGCGGGTACATGAGATTGAGAG GGGATGAAGAAGACGGGTTTCTTGAGAAACCAGGGGATTGTGGTTTCTTCTGCTCGAAGTTGAAATGGTGTGATGTTTTGTATTGGGTCAAGCTCGTAAC TCTGTTGGCTGTTGTGGGTGGTGTGGCTTTCGTTGTTTTCAAATGGGTTGGCCCCTTCTTCATGGAAAACGAAATTATTCCTATCATAAACTGGGAGAAA TCAACGTTTACTACTCCACAGCTGGGGCTACTGGTCTTCCTGTCAGTTGCATTATTCCCAATCCTGCTCCTTCCATCTTCTCCTTCAATGTGGATAGCTG GGATGACTTTTGGCTATGGATACGGATTCTTATTGATCACAGTCGCTTTGGCAGTTGGAATCTCACTTCCATTTTGTATTGGCAATCTGTTCCTGCATAA AATTCGGGTGCGGTTAGAGAAGTATCCAAAGCAGGCAGCCATATTGAGAGCAGCAGGTGAAGGAAATTGGTTCCATCAGTTTCGTGCAGTGGCTCTGATA AGAATTTCGCCATTTCCTTACGTCCTGTATAATTACTGTGCCGTTGCAACTCATGTTAAGTACGGCCCTTATCTGCTGGGGTCGTTGGTGGGTATGGCGC CAGACACCTTTTTGACACTCTATACTGGGATCATCATATTGACCCTGGCAGATGCTTCAAAAGAACATCACAATCTATCAGCCCCACAGATCGCCTTCAA TGTCGTCGGTTTCTCTTGCACAGCAGCCACCGCAGTGTTCTTCACACTCTACGCTAAGAGAAGGCTCAAGACACTGCCAGAGGAACCTCTGTTATCGTAG
AA sequence Show only first row Show all	>Lus10008915 pacid=23175144 polypeptide=Lus10008915 locus=Lus10008915.g ID=Lus10008915.BGIv1.0 annot-version=v1.0 MPYINEDDSLVSELRMRVDDNDGVDKSGYMRLRGDEEDGFLEKPGDCGFFCSKLKWCDVLYWVKLVTLLAVVGGVAFVVFKWVGPFFMENEIIPIINWEK STFTTPQLGLLVFLSVALFPILLLPSSPSMWIAGMTFGYGYGFLLITVALAVGISLPFCIGNLFLHKIRVRLEKYPKQAAILRAAGEGNWFHQFRAVALI RISPFPYVLYNYCAVATHVKYGPYLLGSLVGMAPDTFLTLYTGIIILTLADASKEHHNLSAPQIAFNVVGFSCTAATAVFFTLYAKRRLKTLPEEPLLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12450			SNARE associated Golgi protein...		Lus10008915 [exp]	0	1
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Lus10024644 [exp]	9.3	0.7766
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10007624 [exp]	11.8	0.7699
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10005716 [exp]	12.3	0.7455
AT1G74300			alpha/beta-Hydrolases superfam...		Lus10032809 [exp]	12.4	0.7668
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10018390 [exp]	18.3	0.7618
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10035903 [exp]	19.1	0.7514
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10020281 [exp]	19.9	0.7484
					Lus10007144 [exp]	25.8	0.7438
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10003107 [exp]	26.9	0.7461
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10017288 [exp]	29.2	0.7436

Compare expression of checked genes

Lus10008915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.