Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37740 115 / 2e-30 GRF ATGRF2 growth-regulating factor 2 (.1) AT3G52910 112 / 6e-30 GRF ATGRF4 growth-regulating factor 4 (.1) AT2G36400 112 / 8e-30 GRF ATGRF3 growth-regulating factor 3 (.1) AT2G22840 106 / 4e-27 GRF ATGRF1 growth-regulating factor 1 (.1) AT3G13960 104 / 8e-27 GRF ATGRF5 growth-regulating factor 5 (.1) AT5G53660 101 / 6e-26 GRF ATGRF7 growth-regulating factor 7 (.1) AT2G06200 97 / 6e-25 GRF ATGRF6 growth-regulating factor 6 (.1) AT2G45480 92 / 3e-22 GRF ATGRF9 growth-regulating factor 9 (.1) AT4G24150 82 / 1e-18 GRF ATGRF8 growth-regulating factor 8 (.1) AT4G21430 42 / 0.0001 B160 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028899 [exp] 268 / 3e-93 AT2G36400 117 / 1e-31 growth-regulating factor 3 (.1) Lus10020352 [exp] 122 / 7e-34 AT3G13960 167 / 2e-48 growth-regulating factor 5 (.1) Lus10009533 [exp] 120 / 2e-32 AT3G13960 162 / 7e-45 growth-regulating factor 5 (.1) Lus10014380 [exp] 105 / 4e-28 AT2G36400 181 / 5e-55 growth-regulating factor 3 (.1) Lus10037668 [exp] 101 / 1e-26 AT3G13960 156 / 1e-45 growth-regulating factor 5 (.1) Lus10004455 [exp] 102 / 2e-26 AT3G13960 150 / 8e-42 growth-regulating factor 5 (.1) Lus10015651 [exp] 100 / 4e-26 AT3G13960 155 / 5e-45 growth-regulating factor 5 (.1) Lus10011558 [exp] 101 / 3e-25 AT2G22840 268 / 2e-83 growth-regulating factor 1 (.1) Lus10019274 [exp] 100 / 6e-25 AT2G22840 261 / 4e-81 growth-regulating factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G114000 [exp] 121 / 6e-35 AT4G37740 119 / 2e-31 growth-regulating factor 2 (.1) Potri.013G077500 [exp] 120 / 2e-33 AT3G13960 160 / 1e-45 growth-regulating factor 5 (.1) Potri.019G042300 [exp] 114 / 8e-31 AT3G13960 157 / 2e-44 growth-regulating factor 5 (.1) Potri.001G132600 [exp] 112 / 2e-30 AT4G37740 142 / 6e-38 growth-regulating factor 2 (.1) Potri.003G065000 [exp] 110 / 1e-29 AT3G13960 200 / 4e-61 growth-regulating factor 5 (.1) Potri.014G071800 [exp] 110 / 6e-29 AT2G45480 164 / 8e-46 growth-regulating factor 9 (.1) Potri.007G007100 [exp] 110 / 1e-28 AT2G22840 325 / 6e-104 growth-regulating factor 1 (.1) Potri.001G169100 [exp] 108 / 2e-28 AT3G13960 206 / 4e-63 growth-regulating factor 5 (.1) Potri.006G115200 [exp] 108 / 3e-28 AT3G52910 244 / 3e-77 growth-regulating factor 4 (.1) Potri.006G143200 [exp] 106 / 1e-27 AT3G13960 188 / 7e-56 growth-regulating factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [flax] [poplar] WRC WRC PF08880 [flax] [poplar] QLQ QLQ
Representative CDS sequence Show only first row Show all	>Lus10008916 pacid=23175119 polypeptide=Lus10008916 locus=Lus10008916.g ID=Lus10008916.BGIv1.0 annot-version=v1.0 ATGGAGAACAACGAATCCCAACCAGTATATCAGTCAGAGTCGTCGTCACTGCCTCGACGAATCCCAACCGTTGGACTGGGACTAGGACTGATGACTGGAA ACGATGAAGATGATCGCAATCACGACACGACTCTGCAGCTGGGGAAATTGAGATTGGGGGTAGTGTTCACAGTGTCACAGCTGCAAGAGCTGCAGTTGCA GTGGATGATCTACAAGTATATAGAGGCTGGATTAAGAGTTCCACAGACTCTCCTTGTCCCTATCTGGAATAGCTTCCATTCAGCTGTCCCTTTCGTCAAC GCCCCAACCTTGTCCCTATCTTGGACGCAGTGGAGGGAGATGAGCAGGTACAAGAAAGGTGTGGACTTGGACGACGAACCAGGGAGGTGTAGACGAACTG ACGGCAAGAAATGGAGGTGCAGCAAGGAATCACTCCCTGATCATAAGTATTGCCAGAAGCATATCCACCGCGGCCGCCTCAACCGTTCAAGAAAGCGTGT GGAATTGATGCAGTAA
AA sequence Show only first row Show all	>Lus10008916 pacid=23175119 polypeptide=Lus10008916 locus=Lus10008916.g ID=Lus10008916.BGIv1.0 annot-version=v1.0 MENNESQPVYQSESSSLPRRIPTVGLGLGLMTGNDEDDRNHDTTLQLGKLRLGVVFTVSQLQELQLQWMIYKYIEAGLRVPQTLLVPIWNSFHSAVPFVN APTLSLSWTQWREMSRYKKGVDLDDEPGRCRRTDGKKWRCSKESLPDHKYCQKHIHRGRLNRSRKRVELMQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37740	GRF	ATGRF2	growth-regulating factor 2 (.1...		Lus10008916 [exp]	0	1
AT5G66550			Maf-like protein (.1)		Lus10036572 [exp]	9.3	0.7458
AT2G24050		eIFiso4G2	eukaryotic translation Initiat...		Lus10036256 [exp]	12.9	0.7275
AT5G38530		TSBtype2	tryptophan synthase beta type ...		Lus10012746 [exp]	13.7	0.6824
					Lus10027424 [exp]	15.6	0.5930
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10001066 [exp]	18.8	0.6667
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10034085 [exp]	20.9	0.5317
AT2G44210			Protein of Unknown Function (D...		Lus10007458 [exp]	24.3	0.5740
AT3G24050	GATA	GATA1	GATA transcription factor 1 (....		Lus10031464 [exp]	32.7	0.6376
					Lus10012394 [exp]	35.1	0.5864
AT2G31980		AtCYS2	PHYTOCYSTATIN 2 (.1)		Lus10041257 [exp]	37.6	0.6589

Compare expression of checked genes

Lus10008916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.