Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45550 481 / 7e-167 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G45580 452 / 3e-155 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT1G33720 449 / 3e-154 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT3G61040 448 / 5e-154 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT2G45560 448 / 8e-154 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45570 424 / 2e-144 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT5G07990 360 / 1e-119 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT1G33730 351 / 5e-118 CYP76C5 "cytochrome P450, family 76, subfamily C, polypeptide 5", cytochrome P450, family 76, subfamily C, polypeptide 5 (.1) AT4G12320 346 / 8e-114 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12300 340 / 1e-111 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028897 [exp] 789 / 0 AT2G45550 473 / 2e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008936 [exp] 699 / 0 AT2G45550 499 / 6e-174 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028898 [exp] 691 / 0 AT2G45550 488 / 1e-169 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10036079 [exp] 688 / 0 AT2G45550 481 / 5e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028852 [exp] 680 / 0 AT2G45550 471 / 7e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008917 [exp] 677 / 0 AT2G45550 479 / 8e-166 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028896 [exp] 676 / 0 AT2G45550 464 / 3e-160 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008935 [exp] 675 / 0 AT2G45550 476 / 5e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008938 [exp] 671 / 0 AT2G45550 457 / 2e-157 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113900 [exp] 625 / 0 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 594 / 0 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 479 / 4e-166 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150300 [exp] 457 / 2e-157 AT2G45550 503 / 2e-175 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 456 / 4e-157 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150500 [exp] 454 / 3e-156 AT2G45550 497 / 5e-173 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150400 [exp] 447 / 1e-153 AT2G45550 495 / 2e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.006G094700 [exp] 371 / 9e-124 AT3G52970 459 / 4e-158 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.012G137200 [exp] 358 / 7e-119 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G167900 [exp] 357 / 4e-118 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10008918 pacid=23175130 polypeptide=Lus10008918 locus=Lus10008918.g ID=Lus10008918.BGIv1.0 annot-version=v1.0 ATGGAGATGCTACTCACCATCATTAGCCTCCTCACCACCTTAGCAATCTTTCTCCATTTCCGGTCAAGCAAAACTCGGGCGGCGGCCAATCTCCCACAGG GCCCTCCCCGCCTTCCGATCATAGGCAACCTCCACAATCTGGGCGACCAACCCCACCAATCACTAACCGATCTCGCCAAGATTCACGGCCCCATAATGAG CCTGAAACTCGGCCAACTCACCACGATCGTCGTCTCTTCTCCGACCTTAGCCAAACAAATCCTCCAAAAGCACGACCAACGCCAGGACAACCTCTCCATC CGGGCTCACGACCACCATGAGCACGGCCTCCCTTGGGTCCCCATAGGACCCAAGTGGAGGAACCTCAGGAAAATCTGCAATACGTATCTATTCACCACCC AGAAGCTGGATTCCAACAAAGAGCTGAGGGGGAAGAAGATTCAAGAGCTTTTAGAAGGTGTTCGACAAAATGCCTACGAGGGAAAAGCGGTGAATATCGG GAAGGTGGCGTTCAAGACGACTTTTAGCGCATTGTCGACAACTGTGCTTTCGTTGGATATGACGGATGAAGGGTCGTCCGAGGATGCAAGAGAGTTTGAG GAAGTGGCGAGGAGTATAATGGCTGAAGCTGGGAAGGCCAACTTGGGAGACTACTTCCCCCTATTGGGTAAGTTGGATTTGCAAGGGATACATAGGCAAA TGAGGACTCTTTTCGGGAAGGTGTTCGTTTTGTTTGCAAGGGTAATCGACCAACGGTTCGAGAGTCGGAAGTCCAAGGAGTATGTAACGTGCACTGACAT GTTGGATACGTTGCTGGACATTGTTGATCAAGAGAATGCTGAAGCTTCAATGGATCTAGATCTCATCAAGCACTTGTTCTTGGATCTATTTGTGGCGGGT ACTGATACAACTTCGAGCACATTAGAATGGGCAATGGTAGAGCTACTCCGCAATCCAAACACATTTGCTAAAGCAAGGGAAGAACTCGACAGAGTTATTG GAAGAGACAATCACCTTCAAGAATCAGACATCCTTCGATTACCTTACCTACAAGCAATAATTAAGGAGACATTTAGGCTACACCCGTCGGTTCCTCTCCT TCCTCGCAAGGCAGGATTCGACGTGGAAGTGTCCGGCTTCACCGTGCCTAAGGGAGCACAAATTCTGGTGAATGCATGGGCTATTGGTAGAGATCCGGCC ACATGGGGCAATCCAAACTCATTCATGCCTGAGAGGTTCATGGAATCAGAGGTCGATTATAGAGGGAATAGTTTTGAGTTGATACCGTTCGGTGGGGGAC GAAGGATCTGCCCTGGATTGCCGTTGGCAATGAGGATGTTGCATATGATGTTAGGTTCGTTAGTTCATTGGTTTGACTGGAAGCTGGAGGATGGAGTCGA GCCGGAGAGTTTGGATATGGAAGAGAAGTTTGGGATCAGTTTGCAGAAAGCCAAACCTTTGTTGGCTGTGCCTGTTTTGGCGACTAGATAA
AA sequence Show only first row Show all	>Lus10008918 pacid=23175130 polypeptide=Lus10008918 locus=Lus10008918.g ID=Lus10008918.BGIv1.0 annot-version=v1.0 MEMLLTIISLLTTLAIFLHFRSSKTRAAANLPQGPPRLPIIGNLHNLGDQPHQSLTDLAKIHGPIMSLKLGQLTTIVVSSPTLAKQILQKHDQRQDNLSI RAHDHHEHGLPWVPIGPKWRNLRKICNTYLFTTQKLDSNKELRGKKIQELLEGVRQNAYEGKAVNIGKVAFKTTFSALSTTVLSLDMTDEGSSEDAREFE EVARSIMAEAGKANLGDYFPLLGKLDLQGIHRQMRTLFGKVFVLFARVIDQRFESRKSKEYVTCTDMLDTLLDIVDQENAEASMDLDLIKHLFLDLFVAG TDTTSSTLEWAMVELLRNPNTFAKAREELDRVIGRDNHLQESDILRLPYLQAIIKETFRLHPSVPLLPRKAGFDVEVSGFTVPKGAQILVNAWAIGRDPA TWGNPNSFMPERFMESEVDYRGNSFELIPFGGGRRICPGLPLAMRMLHMMLGSLVHWFDWKLEDGVEPESLDMEEKFGISLQKAKPLLAVPVLATR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008918 [exp]	0	1
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10031622 [exp]	1.0	0.9707
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10003371 [exp]	2.0	0.9654
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10008168 [exp]	2.4	0.9644
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Lus10031188 [exp]	2.8	0.9580
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10024306 [exp]	3.2	0.9445
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Lus10039300 [exp]	3.3	0.9362
AT5G51500			Plant invertase/pectin methyle...		Lus10031719 [exp]	6.9	0.9435
AT5G67020			unknown protein		Lus10019249 [exp]	8.7	0.9127
					Lus10024932 [exp]	13.4	0.9053
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Lus10043113 [exp]	13.6	0.9423

Compare expression of checked genes

Lus10008918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.