Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028894 [exp] 405 / 8e-146 ND / Lus10011163 [exp] 244 / 3e-82 ND / Lus10043068 [exp] 236 / 4e-79 ND / Lus10042472 [exp] 220 / 1e-72 ND / Lus10026194 [exp] 219 / 2e-72 ND / Lus10042473 [exp] 213 / 4e-68 ND / Lus10034839 [exp] 207 / 3e-67 ND / Lus10028571 [exp] 203 / 6e-66 ND / Lus10028109 [exp] 202 / 1e-65 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G307100 [exp] 269 / 3e-92 ND / Potri.001G306932 [exp] 251 / 3e-85 ND / Potri.019G002400 [exp] 241 / 4e-81 ND / Potri.001G307000 [exp] 229 / 1e-76 ND / Potri.005G193200 [exp] 214 / 2e-70 ND / Potri.002G067000 [exp] 204 / 2e-66 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF08787 [flax] [poplar] Alginate_lyase2 Alginate lyase
Representative CDS sequence Show only first row Show all	>Lus10008920 pacid=23175117 polypeptide=Lus10008920 locus=Lus10008920.g ID=Lus10008920.BGIv1.0 annot-version=v1.0 ATGGCTTCGATTTCTGGTGGAGGTGTATCGTTATTGTGCAGTCTTGTAATCCTTGTTCAGCTATTTCCCTGGCTAGCTTTCGGTGATGTTGATCCAACCG AAGGGTTCGTTGCTGTTCCGCTGAGTGATTCGAACTTCGAGGTCCAGTGGCCGTACGATCTACAAAAGGACCAACGTTACAGCTACCAAGACGGCGTCCA CAAGCTTTGGGTTTACTCGACTGACAAACCACACTTCAAGGGTAGCAACACTAGACCTCGCACCGAAATCCGTATTACTGGGAATGACTATTCGTCGGGA GTGTGGCAATTTGAAGGCCATGGGTTCGTGCCAAGCGGGACATCAGGGGTGTGCGTGATGCAAGTTTTCGGAGCGAGTGGTCGTGCAACCACGATGATGG TTCGAGTTTATCGCGGGGAACTCTCGGCGTACCGTGCCCCCATCCTTTCGGACATCTACAATAGGTGGTTTCGGTTGAATGTGATCCACGATGCTGATGC CGGAAAGCTGAAGATTTATGTGGACGGTAGTCTTGTCTATCAGGGACCGGGCCACGGCGGTAAGTCCCATTTTTTCAAGTTTGGAGTTTACACTCAGGAT GACGCATCTAAGTACATGGAGTCTCGTTGGAAAGGGATCAAGGTTTTCAAGAAGCAGTAG
AA sequence Show only first row Show all	>Lus10008920 pacid=23175117 polypeptide=Lus10008920 locus=Lus10008920.g ID=Lus10008920.BGIv1.0 annot-version=v1.0 MASISGGGVSLLCSLVILVQLFPWLAFGDVDPTEGFVAVPLSDSNFEVQWPYDLQKDQRYSYQDGVHKLWVYSTDKPHFKGSNTRPRTEIRITGNDYSSG VWQFEGHGFVPSGTSGVCVMQVFGASGRATTMMVRVYRGELSAYRAPILSDIYNRWFRLNVIHDADAGKLKIYVDGSLVYQGPGHGGKSHFFKFGVYTQD DASKYMESRWKGIKVFKKQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008920 [exp]	0	1
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020252 [exp]	2.6	0.9190
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10021184 [exp]	3.2	0.8573
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10020867 [exp]	4.0	0.8698
					Lus10010697 [exp]	4.7	0.8988
AT4G13230			Late embryogenesis abundant pr...		Lus10022822 [exp]	5.7	0.8988
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10010501 [exp]	5.8	0.8013
AT5G20610			unknown protein		Lus10025003 [exp]	6.6	0.8988
					Lus10026869 [exp]	6.9	0.8131
					Lus10008327 [exp]	7.4	0.8988
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10008762 [exp]	8.1	0.8988

Compare expression of checked genes

Lus10008920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.