Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 356 / 6e-114 ARA12 Subtilase family protein (.1) AT2G05920 355 / 2e-113 Subtilase family protein (.1) AT1G04110 334 / 3e-105 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT3G14067 330 / 1e-103 Subtilase family protein (.1) AT3G14240 325 / 6e-102 Subtilase family protein (.1) AT4G34980 325 / 1e-101 SLP2 subtilisin-like serine protease 2 (.1) AT1G01900 319 / 1e-99 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT2G04160 312 / 7e-97 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G51750 298 / 1e-91 ATSBT1.3 subtilase 1.3 (.1) AT5G59810 293 / 1e-89 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028893 [exp] 842 / 0 AT1G04110 580 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10007036 [exp] 671 / 0 AT5G67360 564 / 0.0 Subtilase family protein (.1) Lus10006693 [exp] 652 / 0 AT5G67360 563 / 0.0 Subtilase family protein (.1) Lus10008919 [exp] 521 / 1e-177 AT5G67360 561 / 0.0 Subtilase family protein (.1) Lus10028895 [exp] 520 / 3e-177 AT5G67360 566 / 0.0 Subtilase family protein (.1) Lus10006689 [exp] 500 / 8e-170 AT2G05920 563 / 0.0 Subtilase family protein (.1) Lus10006303 [exp] 499 / 2e-169 AT5G67360 563 / 0.0 Subtilase family protein (.1) Lus10029575 [exp] 495 / 6e-168 AT5G67360 552 / 0.0 Subtilase family protein (.1) Lus10029570 [exp] 495 / 1e-167 AT5G67360 550 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113700 [exp] 516 / 1e-175 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.019G006570 [exp] 506 / 2e-172 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 504 / 3e-171 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 499 / 3e-169 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 493 / 8e-167 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G074600 [exp] 378 / 5e-122 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.006G141200 [exp] 353 / 1e-112 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.002G256300 [exp] 353 / 1e-112 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.009G133400 [exp] 343 / 1e-108 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1) Potri.004G173900 [exp] 341 / 5e-108 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10008921 pacid=23175142 polypeptide=Lus10008921 locus=Lus10008921.g ID=Lus10008921.BGIv1.0 annot-version=v1.0 ATGTCCACTCCATCCCACGCAGCATTTCTTGTTCTCTTCATCAGCAAAGAGAACAAGAACTGCAATATGTTGGGTCAAATTATCATGTTTCTACTTGTTG CTTCTTCTATGTTCTGTTTCCCCCAGGCAGAAGTACTTCCAGCTGGAGAAAATGCACTGAGCACATATCTGGTATTTGTGGAGAAACCTCTCGGCTTAGA ATCATTCGAATCGGAGGATCTTGATAGGTACTACCAGCAGTTCCTGCCAGTTACTGAACTAAGCTCTGACGATTCACGGATGGGCAAGGTTCCGGAACAG CTGTTGGAATGGCACCCATGGCTCACTTGGCCATATACAAAGCGTGTGGCCCACAAGGCTGTCCTGACCGGAGCGATCAAGAAGGGAGTTTTTGTTAGCT GTGCTGCGGGGAATAACGGTCCGGGTACCGGCACTTTGTCTAATGAAGCACCATGGATTCTAACTGTTGGAGCTAGCACTGTTGATAGACAAATGATATC AACTGTTTATCTTGGCAACAAAAATGAGTTTGATGGTCAAACCCTTTTCCAGCCGAAGGATTTCAATTCCGAAAAAATGTTGCCACTTATTTATGCAGGC TCAGCTGATAACTCATCAGCTGTGTTCTGTGCACCTGGATCACTAAGCCAACTTGATGTCAAGGGCAAAATAGTCGTCTGTGAAATCGGAGGCCAAATCA AGAGACTTGATAAAGGAATCGAAGTGAAAGCAAACGGCGGAGCTGCCATGATTCTAATCAATAACAAAGATTATGGTTTCACAACATTAGCTGATGCTCA TGAGCTACCAGCATCACACGTCAGCTATGAAGCAGGGAATTCCATCAAGGGTTACATCAACTCCACATCATCGCCGGTTGCAAAAATCGCATTCAAAGGA ACCGTGATTCGCAAGCAAAATGCTCCCCAAGTCGCTTCCTTTTCATCAAGGGGTCCCAGCCAATCGAGCCCCGGGATCATGAAACCTGACATCATTGGAC CTGGTGTAAGCACATTAGCAGCTTGGCCAACTCCTCTAGAGGAGTTGGCCAATTCGCAACAAGCGAATTTCAACATGATATCCGGAACATCAATGGCATG CCCTCATCTAAGCGGCATTGCAGCGATGCTTCGAAGTGCTCATCCAGATTGGTCACCAGCTGCAGTAAAATCAGCCATGATGACAACAGCACATTTGACT CAAACTGGTGGGCAGCCGATTTCTGATGAGCAACATCTTCTAGCCGATATGTTCGACATGGGATCCGGTCATATAAATCCAACCGGAGCCAGCAATCCTG GACTGGTCTATGATATCCAACCGGAAGACTATGTTCCTTACCTATGTGGTTTGGGTTACAACAATGCTCAAGTGTCCACCATTGTGCAGCAGAAGGTCGA ATGCTCTTTGAATGCATCGATATCCGAAGCTGAGCTGAACTACCCGTCTTTCGTGGTACAATTGGGCTCATCTCAGCCAGTGACGTACACCAGAACAGTG ACTAATGTCGGGAAGGCGAACTCGGTGTACAAAGTGGAGGTGTATGCACCGGAGGAAGCTGTGGGGGTTGAAGTGAAGCCTACTGAGATTGCTTTCAGTA AGTTGAATGAGAAGGCGAAATACTCGGTCACATTCGTGGCGAAGAATGGGACGAGTGCGAGGTTTGTTCAAGGGAGCATGTTCTGGGTGGCTGATGGGTA CAGTGTGAAGAGTCCTTTTGGCATCATATTTGACTGA
AA sequence Show only first row Show all	>Lus10008921 pacid=23175142 polypeptide=Lus10008921 locus=Lus10008921.g ID=Lus10008921.BGIv1.0 annot-version=v1.0 MSTPSHAAFLVLFISKENKNCNMLGQIIMFLLVASSMFCFPQAEVLPAGENALSTYLVFVEKPLGLESFESEDLDRYYQQFLPVTELSSDDSRMGKVPEQ LLEWHPWLTWPYTKRVAHKAVLTGAIKKGVFVSCAAGNNGPGTGTLSNEAPWILTVGASTVDRQMISTVYLGNKNEFDGQTLFQPKDFNSEKMLPLIYAG SADNSSAVFCAPGSLSQLDVKGKIVVCEIGGQIKRLDKGIEVKANGGAAMILINNKDYGFTTLADAHELPASHVSYEAGNSIKGYINSTSSPVAKIAFKG TVIRKQNAPQVASFSSRGPSQSSPGIMKPDIIGPGVSTLAAWPTPLEELANSQQANFNMISGTSMACPHLSGIAAMLRSAHPDWSPAAVKSAMMTTAHLT QTGGQPISDEQHLLADMFDMGSGHINPTGASNPGLVYDIQPEDYVPYLCGLGYNNAQVSTIVQQKVECSLNASISEAELNYPSFVVQLGSSQPVTYTRTV TNVGKANSVYKVEVYAPEEAVGVEVKPTEIAFSKLNEKAKYSVTFVAKNGTSARFVQGSMFWVADGYSVKSPFGIIFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008921 [exp]	0	1
AT5G41460			Protein of unknown function (D...		Lus10018123 [exp]	2.0	0.9671
AT1G69180	YABBY	CRC	CRABS CLAW, Plant-specific tra...		Lus10036811 [exp]	5.3	0.9425
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10008534 [exp]	5.7	0.9409
AT1G11545		XTH8	xyloglucan endotransglucosylas...		Lus10007645 [exp]	9.5	0.9397
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10034971 [exp]	17.0	0.9626
AT4G25950		VATG3	vacuolar ATP synthase G3 (.1)		Lus10001543 [exp]	21.4	0.9288
AT3G11930			Adenine nucleotide alpha hydro...		Lus10029310 [exp]	23.0	0.9569
					Lus10026149 [exp]	26.8	0.9543
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10043247 [exp]	30.4	0.9514
AT4G13450			Adenine nucleotide alpha hydro...		Lus10032598 [exp]	31.3	0.8522

Compare expression of checked genes

Lus10008921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.