Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57680 312 / 4e-104 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028891 [exp] 250 / 3e-81 AT1G57680 93 / 8e-22 unknown protein Lus10008842 [exp] 81 / 8e-17 AT1G57680 82 / 4e-17 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G003500 [exp] 486 / 1e-171 AT1G57680 284 / 4e-93 unknown protein Potri.004G227000 [exp] 484 / 4e-171 AT1G57680 306 / 5e-102 unknown protein Potri.012G023500 [exp] 100 / 2e-23 AT1G57680 111 / 6e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008924 pacid=23175176 polypeptide=Lus10008924 locus=Lus10008924.g ID=Lus10008924.BGIv1.0 annot-version=v1.0 ATGCCCCTGACGAGAAGTACTGCCGATGGGCTCGGTGTGGTTACAATTTGTCTAGTAGCTCTCTTGATCATCTTCGGACTAGTGTGCATTGTCTACTCAA TTTACTTCCGATCTCGCATTCGTAATCAGGACTTCAGTCAGCTCGGTTATTTCAGTGGTCCTTGGATCATCCGAATCACCTTCATTATATTTGTCATCTG GTGGGGTGCTGGTGAAATTGTCCGGTTAAGTTTCTTGAGACGTGAGGGTAGGGTGCTGAATGCACTCGACTTAAAATGGCAGGAGAATGTCTGCAAAGTC TACATCATTTCGAATCTCGGGTTTGCCGAACCATGTTTATTCCTCACGCTTGTGTTTCTCCTGCGTGCACCCTTGCAGAGGATGGACTCTGGGATTTTAA CTCAGAGATGGAATTGGAAAACAGCAGGATACATTCTTCTCTTTTGCCTACCAGTGTTCATTCTTCAGCTCTTTATTATTCTAATTGGTCCAGAGCTACA CAAGGAAGATAGTACCTTGATGAAGAGCTTGCCCCACTATTTTACCAAGGCAGCTACAACGCACAGCAGTGCTGTTATTGCACTCTGTACTTACCCTTTA TTGAATACAATCCTCCTTGGGATTTTTGCTACTGTGCTTACATTCTACCTGTTCTGGCTTGGAAGGCGCATCTTGAAGTTGGTTATCAACAAGGGGTTGC AGAAGAGACTATATATACTAATATTCTCAGTTTCAAGCTTCCTTCCTTTGAGGATTATTTTACTGGGATTATCAGTTCTAACAGAACCAGAGAAACCACT CTTCGAAGTGCTGGCTTTTACAGCTTTTCTCGCCCTTCTGTGTTGCTCTGGAATCTCTATCTGCATGCTGGTTTACCTCCCCGTTGCAGATTCATTGGCC TTGGGGAGTGTACGAGATTTGGAGGCGAGGAGAAGGATTAGTGAAGAGCACAATGAAAATGTCTCCCTTATTGCTAACCAGAGCCATCCGGAGGAAGAAA GCAGTCGAATTAGCCCTGACAGGACATCTGATGAATCCACGAAGCGTGGATCTATATCCTTCCGTGCTTACGGGAAGGATGGGACATCGACTGGAGCATT CGTCGAGCTGAGCCTATTTTCTCCCAGTCGAGATGCGACTCCACCTGGATCACCCCCACTTCTTGGCTGGCCGATGCGACCTGAACAAGCTCTTCATGGT CATGGACCGTAG
AA sequence Show only first row Show all	>Lus10008924 pacid=23175176 polypeptide=Lus10008924 locus=Lus10008924.g ID=Lus10008924.BGIv1.0 annot-version=v1.0 MPLTRSTADGLGVVTICLVALLIIFGLVCIVYSIYFRSRIRNQDFSQLGYFSGPWIIRITFIIFVIWWGAGEIVRLSFLRREGRVLNALDLKWQENVCKV YIISNLGFAEPCLFLTLVFLLRAPLQRMDSGILTQRWNWKTAGYILLFCLPVFILQLFIILIGPELHKEDSTLMKSLPHYFTKAATTHSSAVIALCTYPL LNTILLGIFATVLTFYLFWLGRRILKLVINKGLQKRLYILIFSVSSFLPLRIILLGLSVLTEPEKPLFEVLAFTAFLALLCCSGISICMLVYLPVADSLA LGSVRDLEARRRISEEHNENVSLIANQSHPEEESSRISPDRTSDESTKRGSISFRAYGKDGTSTGAFVELSLFSPSRDATPPGSPPLLGWPMRPEQALHG HGP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G57680			unknown protein		Lus10008924 [exp]	0	1
AT1G10020			Protein of unknown function (D...		Lus10032807 [exp]	2.0	0.8059
AT1G10550		XTH33, XET	xyloglucan:xyloglucosyl transf...		Lus10013000 [exp]	4.5	0.7681
AT5G53310			myosin heavy chain-related (.1...		Lus10039322 [exp]	8.5	0.7427
AT1G70780			unknown protein		Lus10035084 [exp]	9.7	0.7300
AT1G12390			Cornichon family protein (.1)		Lus10028906 [exp]	12.5	0.7448
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10001786 [exp]	34.2	0.7056
AT5G38900			Thioredoxin superfamily protei...		Lus10034369 [exp]	34.7	0.7176
AT1G01540			Protein kinase superfamily pro...		Lus10036386 [exp]	37.1	0.7094
AT3G61260			Remorin family protein (.1)		Lus10017811 [exp]	40.3	0.7041
AT3G07470			Protein of unknown function, D...		Lus10004300 [exp]	41.5	0.6465

Compare expression of checked genes

Lus10008924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.