Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57700 545 / 0 Protein kinase superfamily protein (.1) AT1G53050 541 / 0 Protein kinase superfamily protein (.1) AT1G09600 540 / 0 Protein kinase superfamily protein (.1) AT1G33770 509 / 3e-172 Protein kinase superfamily protein (.1) AT1G54610 503 / 1e-170 Protein kinase superfamily protein (.1.2.3) AT1G71530 492 / 6e-168 Protein kinase superfamily protein (.1.2) AT5G50860 492 / 4e-166 Protein kinase superfamily protein (.1) AT5G44290 490 / 1e-164 Protein kinase superfamily protein (.1.2.3.4) AT1G18670 478 / 4e-159 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) AT1G03740 477 / 7e-159 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028890 [exp] 1111 / 0 AT1G09600 631 / 0.0 Protein kinase superfamily protein (.1) Lus10000170 [exp] 852 / 0 AT1G09600 570 / 0.0 Protein kinase superfamily protein (.1) Lus10025773 [exp] 545 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 543 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10001715 [exp] 518 / 3e-176 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012805 [exp] 517 / 4e-176 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004144 [exp] 521 / 9e-176 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 505 / 2e-171 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10015727 [exp] 504 / 4e-169 AT1G18670 884 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G226900 [exp] 588 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.003G003700 [exp] 575 / 0 AT1G09600 703 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 556 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.011G119400 [exp] 551 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.005G045500 [exp] 526 / 1e-179 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G204400 [exp] 522 / 1e-178 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G032200 [exp] 518 / 2e-176 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G103300 [exp] 516 / 9e-176 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.019G073100 [exp] 517 / 3e-175 AT1G71530 740 / 0.0 Protein kinase superfamily protein (.1.2) Potri.013G100100 [exp] 517 / 5e-175 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10008925 pacid=23175150 polypeptide=Lus10008925 locus=Lus10008925.g ID=Lus10008925.BGIv1.0 annot-version=v1.0 ATGAGCTCCAAGGTCTGTTTCACTGTGTTTGCCATTCTCTGCCTTGGTTTCCTCCTCTCCAGTACTACAACTGCAATTTCGTCAGCTGATGATCACCCCG ATTGTTCTCCCCCGCTGAGCTCGTCTTCCCCCAGAAAATTTCTGATCGGTAGTAAGACCGATGGCCAGACGAAGAACTCGGCTGGAATCGAATGTGTACA GTGCAAGTGTGGAAGAATTACGTGTCCTTGCTGCGATGCTTTTGGGGCAGTGCTGCTAAATAACGATGGAAACCCAACATTTCCAAGCTTCCTTAATCAT GGGATCAAGAAAGTTTGGGTGGGTGTTATGGGCTGCATTTGCTCCAAAGGAGGCCAACAAGAGAATGGTAGTCTTAATGTAGAGAGTAGCGACGGCAAAA CCAGCAAAGGGAAGAGCAAGAAATCTTCCAGACGGTTAGTTTCGAAACGAGACCAAGATACCGAGACCGACGAGGAGTATGAGAACGTGTGCTCGATTAT TAACCAAGGTAATGACGTCGACCATGATGTCGGGTCGTCCTCTCCGTTGGCAGTCCACGATCATCACCACGAGGTCGACAGGAAGAGCAAATCCAAGATG TCGGGCGTCGGGATTCGAAGCATGGCGGTGGCTAATGGCGAGAAAGGAGCTCAAGTTGTCGCCGGTTGGCCTTCTTGGCTCACTGCTGTTGCTGGTGAAG CCATTAATGGTTGGATCCCTCGGAGGCTCGACTCTTTTGAAAAGTTAGAAAAGATTGGACAAGGAACATATAGTAGCGTTTACAAGGCTAAAGATCTCGA GTCGAAGAAAATAGTGGCACTGAAGAAAGTTCGTTTTGCCAACATGGATCCAGAGAGTGTCAAGTTCATGGCAAGAGAGATAATCATATTACGTAGACTA GATCATCAAAATGTTATGAAGCTTGAAGGCATCATCACGTCAAGAATGTCCGGTAGCTTGTACCTCGTTTTCGAGTACATGGACCACGACCTCTCCGGTC TCTTATCAAGTGCAGGGTCTCAATTCACCGAATCTCAGATTAAATGCTACATGAAGCAGCTACTCCAGGGACTAGAGCATTGCCACAGCCGCGGAATCAT GCACCGTGACATGAAAGGATCAAATCTTCTGATCGATTCCAACGGCATACTCAAGATTGCGGACTTCGGTCTTGCAACCTTCTGTAAGCCTAGCGACGAC CAGCCTTTAACGAGCCGGGTGGTCACTTTATGGTACAGACCACCCGAGCTTCTGCTCGGATCAACAAAGTACGGTGTAGAAGTCGATTTATGGAGTTCTG GTTGCATCCTGGCTGAATTGTTCAATGGAAAGCCTATCATGCCTGGAAGAACAGAGGTGGAGCAGATTCATAAAATCTTCAAGCTTTGTGGGTCACCTTC AGATGAGTACTGGAAGACGTCAAAAGTGTCTCATAACACAGTCTTCAAACCACAACAGCCATACAAACGACGTGTCGTTGAAACATTCAAGGACATGATT CCTTCGTCGGCTATGGCACTTCTTGAAATGCTTCTTGCCCTAGAGCCTGAAGATCGCGGGTCAGCAACTTCAGCACTTACTAGCGAGTTCTTCACCACAG AGCCTCTTCCATGTGACCCATCTAGCCTGCCAACTTACCCTCCCAGCAAGGAATTTGATGTCAAGTTCCGCGAAGACGAAGCTAAAAGGAAAAGCAGAGC AGGAGGCAAAGGCAGGGGAAGAGAATCAGAAAGGATCACATTCACCAAAGGAACAAGACTTGTCGCAGCTCCTAATGCCAACGTGAAGAGATCAAAAGCA CAGGGGACCAAGGATAGATCAATCATGAACAACGAAAGTCAGACCAATAAAGACAACGATGAAGCTTCGAATAAGGCCTCAACATCGACGACAAATGCAA CCTCTTCTTCTTCAAAGCAAACACCCAAGTCTCCGCCTTCTAAATCTGCAGCGCAAGCAGCTCAACTGTCGAGATTTTCGAACTCGGTGGTCATTAGAGA CAACAGCTCACACTATGATTATGGTGGCGGTAACTCCGACCATTGGCAGAAAGTTCGTGACCACGCCCCTACTGGCATGGACTCCACCAGGGCGTTTTTC GGGAAGAAAGGAAGGATGCATCATTCGGGGCCATTGATGACGGCGGGAGGGAACATTGAAGAGATGTTGAAAGAGCACGAACGGAGAATTCAACATGCCG TGAGGAAAGCAAGGTCGGGGAAGAATAAGAACTTCCAAGCTGATGGTGAAGGTGAACAAGATGGATCCCAGTTATATCGAGTCAAAAAATGA
AA sequence Show only first row Show all	>Lus10008925 pacid=23175150 polypeptide=Lus10008925 locus=Lus10008925.g ID=Lus10008925.BGIv1.0 annot-version=v1.0 MSSKVCFTVFAILCLGFLLSSTTTAISSADDHPDCSPPLSSSSPRKFLIGSKTDGQTKNSAGIECVQCKCGRITCPCCDAFGAVLLNNDGNPTFPSFLNH GIKKVWVGVMGCICSKGGQQENGSLNVESSDGKTSKGKSKKSSRRLVSKRDQDTETDEEYENVCSIINQGNDVDHDVGSSSPLAVHDHHHEVDRKSKSKM SGVGIRSMAVANGEKGAQVVAGWPSWLTAVAGEAINGWIPRRLDSFEKLEKIGQGTYSSVYKAKDLESKKIVALKKVRFANMDPESVKFMAREIIILRRL DHQNVMKLEGIITSRMSGSLYLVFEYMDHDLSGLLSSAGSQFTESQIKCYMKQLLQGLEHCHSRGIMHRDMKGSNLLIDSNGILKIADFGLATFCKPSDD QPLTSRVVTLWYRPPELLLGSTKYGVEVDLWSSGCILAELFNGKPIMPGRTEVEQIHKIFKLCGSPSDEYWKTSKVSHNTVFKPQQPYKRRVVETFKDMI PSSAMALLEMLLALEPEDRGSATSALTSEFFTTEPLPCDPSSLPTYPPSKEFDVKFREDEAKRKSRAGGKGRGRESERITFTKGTRLVAAPNANVKRSKA QGTKDRSIMNNESQTNKDNDEASNKASTSTTNATSSSSKQTPKSPPSKSAAQAAQLSRFSNSVVIRDNSSHYDYGGGNSDHWQKVRDHAPTGMDSTRAFF GKKGRMHHSGPLMTAGGNIEEMLKEHERRIQHAVRKARSGKNKNFQADGEGEQDGSQLYRVKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09600			Protein kinase superfamily pro...		Lus10008925 [exp]	0	1
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10040120 [exp]	13.3	0.7290
					Lus10011078 [exp]	19.2	0.6990
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10025763 [exp]	23.5	0.6990
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10025669 [exp]	27.1	0.6990
					Lus10027689 [exp]	30.3	0.6990
AT2G20420			ATP citrate lyase (ACL) family...		Lus10022902 [exp]	33.2	0.6990
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10023431 [exp]	35.9	0.6990
					Lus10011425 [exp]	38.4	0.6990
					Lus10011832 [exp]	40.7	0.6990
AT3G49720			unknown protein		Lus10012481 [exp]	42.9	0.6990

Compare expression of checked genes

Lus10008925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.