Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008925 [exp] 58 / 2e-11 AT1G09600 643 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008926 pacid=23175124 polypeptide=Lus10008926 locus=Lus10008926.g ID=Lus10008926.BGIv1.0 annot-version=v1.0 ATGAGGTGCAAGGTTTTCTTTGTGTTTGCGATTCTGTTTCTTGGTTTTGTATTCTCGACTGCGATGCCATCTGCGGACGCAGCTGGAATCGAATGTGTGA GGTGCAACTGTAGATCATATGGGTGCCTTTGCTGCGATGCTTCTGGGACGGTACTATTGAATCAGGATGGCAAGCCAATTGCTACCTTCCTAATTCATCA AGACGAAGCACACAAGGACGGAGGAGATTGA
AA sequence Show only first row Show all	>Lus10008926 pacid=23175124 polypeptide=Lus10008926 locus=Lus10008926.g ID=Lus10008926.BGIv1.0 annot-version=v1.0 MRCKVFFVFAILFLGFVFSTAMPSADAAGIECVRCNCRSYGCLCCDASGTVLLNQDGKPIATFLIHQDEAHKDGGD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008926 [exp]	0	1
					Lus10018114 [exp]	3.0	0.7746
					Lus10035428 [exp]	8.0	0.7407
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Lus10017952 [exp]	13.3	0.7713
AT1G29430			SAUR-like auxin-responsive pro...		Lus10007067 [exp]	16.0	0.7089
AT3G61680			alpha/beta-Hydrolases superfam...		Lus10040915 [exp]	16.1	0.7402
					Lus10009357 [exp]	22.1	0.7177
AT4G29035			Plant self-incompatibility pro...		Lus10022825 [exp]	24.7	0.7513
					Lus10038154 [exp]	36.5	0.7358
AT2G26480		UGT76D1	UDP-glucosyl transferase 76D1 ...		Lus10017203 [exp]	42.1	0.6536
AT1G73110			P-loop containing nucleoside t...		Lus10024092 [exp]	45.1	0.7336

Compare expression of checked genes

Lus10008926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.