Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56850 108 / 2e-29 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT2G41070 91 / 3e-23 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT4G34000 64 / 1e-12 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT1G45249 62 / 5e-12 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT1G49720 61 / 2e-11 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2) AT2G17770 59 / 2e-11 bZIP FDP, ATBZIP27 FD PARALOG, basic region/leucine zipper motif 27 (.1.2) AT2G36270 60 / 3e-11 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT4G35900 59 / 3e-11 bZIP ATBZIP14, FD-1, FD Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G19290 58 / 1e-10 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) AT1G03970 50 / 8e-08 bZIP GBF4 G-box binding factor 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028889 [exp] 232 / 2e-77 AT3G56850 273 / 7e-91 ABA-responsive element binding protein 3 (.1) Lus10008929 [exp] 202 / 4e-66 AT3G56850 214 / 3e-68 ABA-responsive element binding protein 3 (.1) Lus10028888 [exp] 165 / 1e-50 AT3G56850 157 / 1e-45 ABA-responsive element binding protein 3 (.1) Lus10009755 [exp] 65 / 4e-13 AT1G45249 283 / 3e-91 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10006489 [exp] 62 / 8e-12 AT1G45249 297 / 1e-97 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10002399 [exp] 61 / 2e-11 AT3G19290 203 / 2e-61 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10027897 [exp] 61 / 2e-11 AT3G19290 289 / 1e-93 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10022720 [exp] 59 / 4e-11 AT2G36270 312 / 2e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10021369 [exp] 59 / 5e-11 AT2G36270 322 / 2e-107 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G010800 [exp] 172 / 3e-54 AT3G56850 246 / 3e-80 ABA-responsive element binding protein 3 (.1) Potri.010G248100 [exp] 167 / 6e-52 AT3G56850 243 / 2e-79 ABA-responsive element binding protein 3 (.1) Potri.010G248300 [exp] 163 / 2e-50 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.006G025800 [exp] 104 / 3e-28 AT3G56850 271 / 7e-91 ABA-responsive element binding protein 3 (.1) Potri.016G024000 [exp] 100 / 2e-26 AT3G56850 241 / 4e-79 ABA-responsive element binding protein 3 (.1) Potri.002G090800 [exp] 97 / 7e-25 AT3G56850 136 / 9e-38 ABA-responsive element binding protein 3 (.1) Potri.001G220700 [exp] 90 / 1e-22 AT3G56850 152 / 2e-44 ABA-responsive element binding protein 3 (.1) Potri.002G018400 [exp] 66 / 4e-14 AT4G35900 133 / 5e-38 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.005G109500 [exp] 65 / 3e-13 AT4G35900 179 / 5e-55 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G018500 [exp] 62 / 5e-12 AT3G56850 160 / 1e-47 ABA-responsive element binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10008927 pacid=23175140 polypeptide=Lus10008927 locus=Lus10008927.g ID=Lus10008927.BGIv1.0 annot-version=v1.0 ATGGGGATGTTTATGCCAGGTCAGCCTGTGCCTCAGCAAGTCCATATGAGGGCTGGTTCTGTGATGGATGTTGCATATCCGGAGAATCCAGTTCCAATAG CTCCCCCACCTCTAATTGGGACATTGTCGGATTCACAAATGGCCTCCAGGAAAAGAGGTGCACCCGACGAAGTAGTTGTGAAGAACGTTGAGAGGAGGCA GAAGAGGATGATAAAAAACCGAGAATCAGCTGCCCGCTCAAGAGCTCGGAAACAGGCATACACAAATGAGCTAGAGAATAAAATTTCTCGCCTGGAAGAG GAAAATGAAAGGCTGAGAAAATTGAAGGAGCTGGAGAACATACTGCCAAGTGCACCAGCAGCACCTGAACCCAGGTATCAGCTTCGGCGAACGTCGTCAT CACCATTCTAA
AA sequence Show only first row Show all	>Lus10008927 pacid=23175140 polypeptide=Lus10008927 locus=Lus10008927.g ID=Lus10008927.BGIv1.0 annot-version=v1.0 MGMFMPGQPVPQQVHMRAGSVMDVAYPENPVPIAPPPLIGTLSDSQMASRKRGAPDEVVVKNVERRQKRMIKNRESAARSRARKQAYTNELENKISRLEE ENERLRKLKELENILPSAPAAPEPRYQLRRTSSSPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10008927 [exp]	0	1
AT5G37930			Protein with RING/U-box and TR...		Lus10009111 [exp]	7.3	0.8588
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Lus10011862 [exp]	8.0	0.8729
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10026036 [exp]	8.3	0.8913
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Lus10015692 [exp]	11.2	0.8434
AT3G13620			Amino acid permease family pro...		Lus10010512 [exp]	11.5	0.8723
AT5G14140	C2H2ZnF		zinc ion binding;nucleic acid ...		Lus10000130 [exp]	14.5	0.7935
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10042643 [exp]	22.0	0.8621
AT5G27990			Pre-rRNA-processing protein TS...		Lus10006795 [exp]	23.2	0.8290
AT4G31350			Core-2/I-branching beta-1,6-N-...		Lus10020159 [exp]	25.3	0.8665
AT1G75060			unknown protein		Lus10028777 [exp]	25.8	0.8509

Compare expression of checked genes

Lus10008927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.