Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56850 137 / 4e-40 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT2G41070 118 / 5e-33 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT1G49720 119 / 4e-32 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2) AT3G44460 108 / 2e-28 bZIP DPBF2, ATBZIP67 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G19290 107 / 1e-27 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) AT4G34000 106 / 3e-27 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT1G45249 97 / 5e-24 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT2G36270 95 / 3e-23 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT5G42910 74 / 1e-15 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028889 [exp] 319 / 4e-111 AT3G56850 273 / 7e-91 ABA-responsive element binding protein 3 (.1) Lus10008929 [exp] 293 / 3e-101 AT3G56850 214 / 3e-68 ABA-responsive element binding protein 3 (.1) Lus10028888 [exp] 214 / 2e-69 AT3G56850 157 / 1e-45 ABA-responsive element binding protein 3 (.1) Lus10021369 [exp] 120 / 1e-32 AT2G36270 322 / 2e-107 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10017049 [exp] 118 / 7e-32 AT2G36270 321 / 1e-106 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10014066 [exp] 115 / 7e-31 AT3G19290 345 / 1e-115 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10006489 [exp] 107 / 1e-27 AT1G45249 297 / 1e-97 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10022720 [exp] 106 / 2e-27 AT2G36270 312 / 2e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10014194 [exp] 105 / 6e-27 AT2G36270 342 / 2e-114 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G248100 [exp] 208 / 2e-67 AT3G56850 243 / 2e-79 ABA-responsive element binding protein 3 (.1) Potri.008G010800 [exp] 207 / 5e-67 AT3G56850 246 / 3e-80 ABA-responsive element binding protein 3 (.1) Potri.010G248300 [exp] 202 / 5e-65 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.009G018500 [exp] 147 / 3e-44 AT3G56850 160 / 1e-47 ABA-responsive element binding protein 3 (.1) Potri.001G220700 [exp] 140 / 1e-41 AT3G56850 152 / 2e-44 ABA-responsive element binding protein 3 (.1) Potri.006G083000 [exp] 120 / 1e-32 AT2G36270 313 / 1e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.016G024000 [exp] 115 / 7e-32 AT3G56850 241 / 4e-79 ABA-responsive element binding protein 3 (.1) Potri.014G028200 [exp] 115 / 5e-31 AT1G45249 317 / 2e-105 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.002G125400 [exp] 114 / 4e-30 AT1G45249 306 / 4e-100 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.009G101200 [exp] 110 / 5e-29 AT4G34000 358 / 2e-120 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008928 pacid=23175122 polypeptide=Lus10008928 locus=Lus10008928.g ID=Lus10008928.BGIv1.0 annot-version=v1.0 ATGGGTTCCAATGGTGATGGTAGGAGTAGCGGCAATCTGTCTCATTTGCAGCCGTTGGGCCGGCAGAACTCACTGTACAACCTCACTCTGGATGAGGTTC AAAATCAGTTGGGTGACTTGGGGAAACCCTTCAGTAGTATGAATCTGGACGAACTTCTTAGAAATGTATGGACAGCTGAGGCTAACCATGTTACGGGTGC AGAGGCCGAAGGCACTCAGATGGCCGATAATCAGACATCCTTGCTGCGGCAGGGAAGCTTGTCAATTGCTGGTGCTTTGAGCAAAAAGACAGTCGATGAG GTTTGGAGAGACATTCAACAAAGCAAAAATAATGGGGAGAGGAAGTCTAAAGATAGACAACCCACTTTGGGGGAGATGACATTGGAGGATTTCCTTGCCA AGGCAGGAGTTGTTGGTGAGGAACCTATCGATGATAATAATAATAGAGATGTTGCTATTGCCGGTTCTGATGCAAATGCGATAATAATAATGATAGAGAT GTTGCTATTGCCGGTTCTGATGCAAATGTAG
AA sequence Show only first row Show all	>Lus10008928 pacid=23175122 polypeptide=Lus10008928 locus=Lus10008928.g ID=Lus10008928.BGIv1.0 annot-version=v1.0 MGSNGDGRSSGNLSHLQPLGRQNSLYNLTLDEVQNQLGDLGKPFSSMNLDELLRNVWTAEANHVTGAEAEGTQMADNQTSLLRQGSLSIAGALSKKTVDE VWRDIQQSKNNGERKSKDRQPTLGEMTLEDFLAKAGVVGEEPIDDNNNRDVAIAGSDANAIIIMIEMLLLPVLMQM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10008928 [exp]	0	1
AT5G35753			Domain of unknown function (DU...		Lus10006380 [exp]	6.2	0.8815
AT2G22370			unknown protein		Lus10023150 [exp]	6.7	0.8194
AT1G69440		ZIP, AGO7	ZIPPY, ARGONAUTE7, Argonaute f...		Lus10037136 [exp]	7.3	0.8309
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10015002 [exp]	10.9	0.8256
AT4G38870			F-box and associated interacti...		Lus10003705 [exp]	13.7	0.8355
AT4G11130		SMD1, RDR2	SILENCING MOVEMENT DEFICIENT 1...		Lus10042134 [exp]	15.7	0.8619
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10037701 [exp]	16.6	0.8540
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Lus10038759 [exp]	17.3	0.8065
AT3G04470			Ankyrin repeat family protein ...		Lus10029612 [exp]	19.4	0.7657
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10038753 [exp]	22.6	0.8033

Compare expression of checked genes

Lus10008928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.