Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56850 214 / 3e-68 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT2G41070 169 / 4e-51 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT1G49720 127 / 1e-33 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2) AT3G44460 119 / 4e-31 bZIP DPBF2, ATBZIP67 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G19290 104 / 2e-25 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) AT4G34000 102 / 2e-24 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT1G45249 97 / 2e-22 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT2G36270 92 / 9e-21 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT5G42910 72 / 6e-14 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT5G44080 56 / 1e-08 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028889 [exp] 545 / 0 AT3G56850 273 / 7e-91 ABA-responsive element binding protein 3 (.1) Lus10028888 [exp] 401 / 8e-141 AT3G56850 157 / 1e-45 ABA-responsive element binding protein 3 (.1) Lus10008928 [exp] 294 / 3e-101 AT3G56850 137 / 4e-40 ABA-responsive element binding protein 3 (.1) Lus10008927 [exp] 207 / 8e-68 AT3G56850 139 / 1e-41 ABA-responsive element binding protein 3 (.1) Lus10017049 [exp] 146 / 9e-41 AT2G36270 321 / 1e-106 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10021369 [exp] 140 / 1e-38 AT2G36270 322 / 2e-107 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10022720 [exp] 118 / 1e-30 AT2G36270 312 / 2e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10014066 [exp] 116 / 1e-29 AT3G19290 345 / 1e-115 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10002399 [exp] 105 / 2e-25 AT3G19290 203 / 2e-61 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G010800 [exp] 381 / 2e-133 AT3G56850 246 / 3e-80 ABA-responsive element binding protein 3 (.1) Potri.010G248100 [exp] 353 / 3e-122 AT3G56850 243 / 2e-79 ABA-responsive element binding protein 3 (.1) Potri.010G248300 [exp] 326 / 7e-112 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.016G024000 [exp] 194 / 1e-60 AT3G56850 241 / 4e-79 ABA-responsive element binding protein 3 (.1) Potri.001G220700 [exp] 184 / 4e-57 AT3G56850 152 / 2e-44 ABA-responsive element binding protein 3 (.1) Potri.006G025800 [exp] 183 / 1e-56 AT3G56850 271 / 7e-91 ABA-responsive element binding protein 3 (.1) Potri.009G018500 [exp] 154 / 2e-45 AT3G56850 160 / 1e-47 ABA-responsive element binding protein 3 (.1) Potri.002G090800 [exp] 143 / 2e-40 AT3G56850 136 / 9e-38 ABA-responsive element binding protein 3 (.1) Potri.009G164500 [exp] 109 / 1e-27 AT3G44460 160 / 2e-46 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.006G083000 [exp] 109 / 3e-27 AT2G36270 313 / 1e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10008929 pacid=23175182 polypeptide=Lus10008929 locus=Lus10008929.g ID=Lus10008929.BGIv1.0 annot-version=v1.0 ATGGGCTCTAATGGTGATGGTAGGGGTAACGGTAATCAGTCTCATTTGCAGCCGTTGGGCCGGCAGAACTCATTGTACAACCTCACTCTGGATGAGGTTC AAAATCAGTTGGGTGACTTGGGGAAACCCTTCAGTAGCATGAATCTGGACGAACTTCTTAGAAATGTATGGACAGTTGAGGCTAACCATGTTACGGGTGC AGAGGCCGAAGGCACTCAGATGGCTGATAATCAAACTTCCTTGCCGCGGCAGGGAAGTTTGTCAATAGCTGGTGCTTTGAGCAAGAAGACAGTTGATGAA GTTTGGAGAGACATTCAACAAAGCAAAAATAATGGGGAGAAAATGTCTAAAGACAGACATTCCACTTTGGGGGAGATGACATTGGAGGATTTCCTTGCCA AGGCAGGAGTTGTTGGTGACGAACCTATCCATGATAATGATAATAATAGAGACGTTGCTATTGCCGGTTCTGATTCAAATTTAGCAGCATGGTTTCCTCA ACAAGGTCAATGGTTGCAGTATCCACATGCACAATTCCAACATCCACAGGCTAATGTTATGGGGATGTTCATGCCAGGTCAGCCTGTTCCTCAGCAAGTC CATATGGGGGCTGCTTCTGTGATGGATGTTGCATATCCGGAGAATCCAGTTCCAATAGCTCCACCACCTTTAATTGGGACATTGTCGGATTCACAAATGG CTTCCAGGAAAAGAGGTGCACCAGATGAAATAGTTGTGAAGAATGTGGAGAGGAGGCAGAAGAGGATGATAAAAAACCGAGAATCAGCTGCCCGATCTAG AGCTCGGAAACAGGAGCTGGAGAACACATTGCCAAGTGTACCAGCAGCACCTGAACCCAGGTATCAGCTTCGGCGAACATCATCGTCCCCATTCTAA
AA sequence Show only first row Show all	>Lus10008929 pacid=23175182 polypeptide=Lus10008929 locus=Lus10008929.g ID=Lus10008929.BGIv1.0 annot-version=v1.0 MGSNGDGRGNGNQSHLQPLGRQNSLYNLTLDEVQNQLGDLGKPFSSMNLDELLRNVWTVEANHVTGAEAEGTQMADNQTSLPRQGSLSIAGALSKKTVDE VWRDIQQSKNNGEKMSKDRHSTLGEMTLEDFLAKAGVVGDEPIHDNDNNRDVAIAGSDSNLAAWFPQQGQWLQYPHAQFQHPQANVMGMFMPGQPVPQQV HMGAASVMDVAYPENPVPIAPPPLIGTLSDSQMASRKRGAPDEIVVKNVERRQKRMIKNRESAARSRARKQELENTLPSVPAAPEPRYQLRRTSSSPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10008929 [exp]	0	1
AT4G14200			Pentatricopeptide repeat (PPR)...		Lus10041255 [exp]	1.0	0.8488
AT5G07590			Transducin/WD40 repeat-like su...		Lus10042992 [exp]	2.0	0.8314
AT3G04470			Ankyrin repeat family protein ...		Lus10032775 [exp]	9.4	0.7891
AT4G21610		LOL2	lsd one like 2 (.1)		Lus10020766 [exp]	9.9	0.7798
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10042113 [exp]	10.5	0.8255
AT4G16650			O-fucosyltransferase family pr...		Lus10028957 [exp]	13.7	0.7300
AT4G09160			SEC14 cytosolic factor family ...		Lus10009458 [exp]	16.5	0.8202
AT4G04670			Met-10+ like family protein / ...		Lus10016343 [exp]	16.9	0.7793
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10010407 [exp]	19.7	0.6740
AT5G01090			Concanavalin A-like lectin fam...		Lus10021117 [exp]	29.0	0.7932

Compare expression of checked genes

Lus10008929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.