Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28010 126 / 2e-37 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT2G01520 119 / 5e-35 ZCE1, MLP328 \(Zusammen-CA\)-enhanced 1, MLP-like protein 328 (.1) AT2G01530 116 / 9e-34 ZCE2, MLP329 \(Zusammen-CA\)-enhanced 2, MLP-like protein 329 (.1) AT1G70840 115 / 3e-33 MLP31 MLP-like protein 31 (.1) AT1G14950 115 / 3e-33 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT5G28000 112 / 5e-32 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G14960 111 / 1e-31 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT4G14060 109 / 4e-31 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G70830 110 / 5e-31 MLP28 MLP-like protein 28 (.1.2.3.4.5) AT1G14940 109 / 5e-31 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028887 [exp] 299 / 5e-106 AT2G01520 129 / 1e-38 \(Zusammen-CA\)-enhanced 1, MLP-like protein 328 (.1) Lus10033397 [exp] 231 / 1e-78 AT1G14950 121 / 1e-35 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10008932 [exp] 228 / 3e-76 AT4G14060 127 / 1e-36 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10042489 [exp] 140 / 5e-43 AT1G14960 104 / 5e-29 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10042490 [exp] 138 / 2e-42 AT1G14930 107 / 3e-30 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10008931 [exp] 111 / 7e-33 AT1G70870 59 / 6e-13 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10020497 [exp] 79 / 3e-19 AT1G70840 148 / 4e-46 MLP-like protein 31 (.1) Lus10020498 [exp] 78 / 2e-18 AT1G70830 160 / 7e-51 MLP-like protein 28 (.1.2.3.4.5) Lus10012466 [exp] 75 / 2e-17 AT1G70830 161 / 3e-51 MLP-like protein 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G131200 [exp] 161 / 1e-51 AT1G14930 122 / 4e-36 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.008G131100 [exp] 161 / 2e-51 AT1G70890 107 / 3e-30 MLP-like protein 43 (.1) Potri.008G131300 [exp] 133 / 1e-40 AT1G14930 100 / 1e-27 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.010G111000 [exp] 83 / 1e-20 AT1G70830 175 / 8e-57 MLP-like protein 28 (.1.2.3.4.5) Potri.017G051100 [exp] 82 / 2e-20 AT1G70840 115 / 3e-33 MLP-like protein 31 (.1) Potri.017G051200 [exp] 66 / 2e-14 AT1G70840 116 / 3e-34 MLP-like protein 31 (.1) Potri.004G032900 [exp] 44 / 5e-06 AT1G24020 59 / 2e-11 MLP-like protein 423 (.1.2) Potri.004G033000 [exp] 44 / 1e-05 AT1G24020 57 / 1e-10 MLP-like protein 423 (.1.2) Potri.004G020000 [exp] 42 / 5e-05 AT1G70880 69 / 3e-15 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10008930 pacid=23175147 polypeptide=Lus10008930 locus=Lus10008930.g ID=Lus10008930.BGIv1.0 annot-version=v1.0 ATGGCAGCAACATCGGAGATGAGCGGGAAGCTGGAGGCGGAGGTGGAGCTGAAATCTCCGCCGGCGGAGTTCTTTAACGTGTTCAGGAAAGCAGCTCACC ACATCCCAACGCACACTCCTTCCAATATTCAGGCTGTCAAGTGCCACCACGGCGACTGGGACAGTCACGACGGCATCAAGATCTGGAACTACACCTGTGA GGGGAAGGCGGAGGTGTTCAAGGAGAGGGTGGAGTTCGACGAGCAGAATAAGATCGTGAAACTGAACGGCTTAGAAGGAGATGTGATGAAGATATATAAA GTGTACAATCCGATTTTCGAGTTCGTGACGAAAAGTGGAGGGCCCGGTGGAGTGGCAAAGCTGGCCATTGAGTACGAGAAGCTGGACCCGAGTTTCCCGC CTCCAACCAAGTACCTGGATTTCATGATCGATCTTACCAAGGAGACTGATGTTGGCCTTGTTAAAGTCGGTTGA
AA sequence Show only first row Show all	>Lus10008930 pacid=23175147 polypeptide=Lus10008930 locus=Lus10008930.g ID=Lus10008930.BGIv1.0 annot-version=v1.0 MAATSEMSGKLEAEVELKSPPAEFFNVFRKAAHHIPTHTPSNIQAVKCHHGDWDSHDGIKIWNYTCEGKAEVFKERVEFDEQNKIVKLNGLEGDVMKIYK VYNPIFEFVTKSGGPGGVAKLAIEYEKLDPSFPPPTKYLDFMIDLTKETDVGLVKVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10008930 [exp]	0	1
AT4G14060			Polyketide cyclase/dehydrase a...		Lus10008932 [exp]	1.0	0.9632
					Lus10028788 [exp]	1.4	0.9586
AT4G35160			O-methyltransferase family pro...		Lus10023987 [exp]	3.5	0.9492
					Lus10042813 [exp]	3.5	0.9338
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028886 [exp]	3.9	0.9265
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10013130 [exp]	4.9	0.9158
AT1G54730			Major facilitator superfamily ...		Lus10002258 [exp]	6.0	0.9256
					Lus10018646 [exp]	6.2	0.8662
AT4G35160			O-methyltransferase family pro...		Lus10018629 [exp]	6.3	0.9058
AT1G67110		CYP735A2	"cytochrome P450, family 735, ...		Lus10006246 [exp]	7.7	0.8947

Compare expression of checked genes

Lus10008930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.