Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14060 127 / 1e-36 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT2G01520 127 / 1e-36 ZCE1, MLP328 \(Zusammen-CA\)-enhanced 1, MLP-like protein 328 (.1) AT1G14930 126 / 2e-36 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G14960 124 / 2e-35 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G14950 123 / 5e-35 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT3G26460 122 / 6e-35 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT3G26450 122 / 1e-34 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT4G23680 121 / 2e-34 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT2G01530 121 / 3e-34 ZCE2, MLP329 \(Zusammen-CA\)-enhanced 2, MLP-like protein 329 (.1) AT1G14940 119 / 2e-33 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033397 [exp] 234 / 2e-78 AT1G14950 121 / 1e-35 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10008930 [exp] 228 / 3e-76 AT5G28010 126 / 2e-37 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10028887 [exp] 227 / 1e-75 AT2G01520 129 / 1e-38 \(Zusammen-CA\)-enhanced 1, MLP-like protein 328 (.1) Lus10042489 [exp] 140 / 1e-41 AT1G14960 104 / 5e-29 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10042490 [exp] 137 / 3e-40 AT1G14930 107 / 3e-30 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10008931 [exp] 96 / 3e-25 AT1G70870 59 / 6e-13 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10020498 [exp] 87 / 8e-21 AT1G70830 160 / 7e-51 MLP-like protein 28 (.1.2.3.4.5) Lus10020497 [exp] 84 / 4e-20 AT1G70840 148 / 4e-46 MLP-like protein 31 (.1) Lus10012466 [exp] 81 / 9e-19 AT1G70830 161 / 3e-51 MLP-like protein 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G131100 [exp] 159 / 3e-49 AT1G70890 107 / 3e-30 MLP-like protein 43 (.1) Potri.008G131200 [exp] 152 / 2e-46 AT1G14930 122 / 4e-36 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.008G131300 [exp] 145 / 6e-44 AT1G14930 100 / 1e-27 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.017G051100 [exp] 103 / 1e-27 AT1G70840 115 / 3e-33 MLP-like protein 31 (.1) Potri.010G111000 [exp] 99 / 2e-25 AT1G70830 175 / 8e-57 MLP-like protein 28 (.1.2.3.4.5) Potri.017G051200 [exp] 87 / 2e-21 AT1G70840 116 / 3e-34 MLP-like protein 31 (.1) Potri.010G096000 [exp] 65 / 5e-13 AT1G24020 188 / 3e-62 MLP-like protein 423 (.1.2) Potri.004G051500 [exp] 64 / 1e-12 AT5G28010 69 / 4e-15 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.004G032900 [exp] 48 / 7e-07 AT1G24020 59 / 2e-11 MLP-like protein 423 (.1.2) Potri.004G033000 [exp] 47 / 2e-06 AT1G24020 57 / 1e-10 MLP-like protein 423 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10008932 pacid=23175167 polypeptide=Lus10008932 locus=Lus10008932.g ID=Lus10008932.BGIv1.0 annot-version=v1.0 ATGGCGGCTAAGGCGGAGGCGGAGACGACATCGGCGATAAGCGGGAAGCTGGAGGCGGAGGTGGAGCTGAAAGCACCTCCGGCGAAGTTATATAACGTAT ACAGGAAGTCGGCACACCAAATCCCAACCCACACCCCTTCCAAAATCCAGTCCATCAAAGTCCACCAAGGCGACTGGGAGTCTCACGGCACCATCAAGAT ATGGAACTACACTTTAGACGGGAAGGAGCAGATGTTCAAGGAAAGGGTGGAGTTCGACGACGGGAAGAAAACAGTGAAAGTGCATGGATTAGAAGGGGAC GTGATGAAGCTGTACAAAGTTTACAATGGAATCTTCGAGTTCGTGTCTATGGGCAATGGTGATCAAGGGGTTGCCAAATTGACGATTGAATATGAGAAGC TGGACCCAAACTTCCCACCTCCGACTAAGTTCATGGACTTCGTTGTTAGCTTTGTTAAGGACATTGATGCTGGCCTTGCCAAAGCCGAGGGGAAGGCAGA GGTGTTGAAGGAGAGGGTGGAGTTCGACGATGAGGAAAAAACCATTAAACTGAATGGGTTAGAAGGAGATCCGATGAAGATATACAAAGTATTCAATCCC ATGTTCAAGCTCGTGTCCGGCAAAGAAGAAGGAGGCGGCCGCGGCGGCGGAGTCGCAAAACTAAGCATCGAATATGAGAAGCTGGACTCCAGTTCCCCAC CTCCGACCAAGTACATGGATTTCATGATCAGCCTTACCAACGAAACTGACGATGGCCTTGTTAAAGCCGTTTGA
AA sequence Show only first row Show all	>Lus10008932 pacid=23175167 polypeptide=Lus10008932 locus=Lus10008932.g ID=Lus10008932.BGIv1.0 annot-version=v1.0 MAAKAEAETTSAISGKLEAEVELKAPPAKLYNVYRKSAHQIPTHTPSKIQSIKVHQGDWESHGTIKIWNYTLDGKEQMFKERVEFDDGKKTVKVHGLEGD VMKLYKVYNGIFEFVSMGNGDQGVAKLTIEYEKLDPNFPPPTKFMDFVVSFVKDIDAGLAKAEGKAEVLKERVEFDDEEKTIKLNGLEGDPMKIYKVFNP MFKLVSGKEEGGGRGGGVAKLSIEYEKLDSSSPPPTKYMDFMISLTNETDDGLVKAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14060			Polyketide cyclase/dehydrase a...		Lus10008932 [exp]	0	1
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10008930 [exp]	1.0	0.9632
AT1G54730			Major facilitator superfamily ...		Lus10002258 [exp]	1.7	0.9460
AT4G35160			O-methyltransferase family pro...		Lus10023987 [exp]	2.4	0.9541
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028886 [exp]	2.8	0.9457
AT5G37990			S-adenosyl-L-methionine-depend...		Lus10028500 [exp]	3.0	0.9263
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010800 [exp]	5.7	0.8846
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036942 [exp]	5.9	0.9328
					Lus10028788 [exp]	5.9	0.9285
					Lus10042813 [exp]	6.0	0.9319
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10006245 [exp]	6.2	0.8992

Compare expression of checked genes

Lus10008932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.