Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04990 398 / 4e-135 ATSUN1 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 1, SAD1/UNC-84 domain protein 1 (.1) AT3G10730 349 / 2e-116 ATSUN2 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 2, SAD1/UNC-84 domain protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028885 [exp] 840 / 0 AT5G04990 426 / 2e-146 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 1, SAD1/UNC-84 domain protein 1 (.1) Lus10034856 [exp] 608 / 0 AT5G04990 429 / 2e-147 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 1, SAD1/UNC-84 domain protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G247900 [exp] 496 / 6e-174 AT5G04990 429 / 2e-147 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 1, SAD1/UNC-84 domain protein 1 (.1) Potri.008G010900 [exp] 483 / 1e-168 AT5G04990 400 / 4e-136 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 1, SAD1/UNC-84 domain protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF07738 [flax] [poplar] Sad1_UNC Sad1 / UNC-like C-terminal
Representative CDS sequence Show only first row Show all	>Lus10008933 pacid=23175155 polypeptide=Lus10008933 locus=Lus10008933.g ID=Lus10008933.BGIv1.0 annot-version=v1.0 ATGTCCGCTTCGACCGTGTCCATCACGGCGAACACCGCGGCGGCTCGCCGGAGGCCTGTCCTCGTCGGTGAAAAGAAGTCCAACACCATAGAGTTGTTCC CCCACGAAGCACAAGCCAAGAATGGCGGCGGCGGGGGCGACACTGGGAATGTCATTGGTAAGGATAAAGTCGCTCCGGCGCAGAGCAAGGATGTGAGTCA TAACTCGATCCGGGGCGAAGCGATTCTCGAGAGAACGTCCAAGGATCCGGTGCTGCTCAGGAAGAGCAACGCGGTTAATTCGACGGTTTCTCCGCGCAGA GGACGGAAACTGGCACCGAAACCTGTAAAGCCACGGTGGGTTACTGTCGCGAGTATTTTTACCAAGAATTTTGCGCTTTTGATCGTGTTGGTGGGGCTAG TTCAGTTGATCAGAGGCTTAGCTTCGAAATCGGAAAGCCCTCATGCAAGGATGACGACTGGTTTAGCAGAGATTGAAGGTCGGATTTCAGAAGTTGAGTC GTTGTTGAAGACTACTGCCAAAATGATTCAGGTTCAGGTGGAAGTTGTGGATAAAAAGATTGAGAATGAGATAGGAGGATTGAGGCATGAAGTGAACCAG AAGCTTCAGGATAGAAGTGTGAATTTCGACACAATGTTGAAGAATTTGGAAACCAGGAGTGAAGTGTTGGAGAAGTCGATAGCGGAGATAAAGGCAGGGG ATTGGTTGACAAAGGATGAGTTCGGGAAGTTCTATGAAGAATTGAAGAAGACGAAAGATGTCCAGCTTGGTGAAGGCTCTCATAGTTTAGATGTTATTAG AGCTTATGCTAAAGAGATTGTGGCAAAGGAAATCGAGAAACATGCTGCGGATGGCCTTGGAAAGGTGGATTATGCCCTTGCTGAGGGTGGTGCTTTTGTG TTAAAGCATTCTGAGTTTTTTGGTAAGCGGAGTCCTTTGGGCGACTGGCTCCGGAGTACTCGTGGTGTTAGTGGGGCTCATCCTGACGCATCTAAGATGT TAAGGCCGAGTTTTGGAGAGCCTGGGCAGTGTTTTCCTCTGAAAGGAACTAGTGGATTTGTGGAGATTAGCCTCCGTAAAGCTATTGTTCCTGAGGCTAT TACGTTGGAGCATGTTGCCAAGAGTGTTGCTTACGATCGATCAAGCGCCCCTAAGGACTGCCGTGTCACTGGCTGGTTAAGAGGCTCTGACATCGCTTCA CCCGTGGATACCGGAAAGACATTGCTTGCTGAGTTCACTTACGACCTGGAAAAGAGTAACGCACAAACCTTTAATGTTTTGACCTCCTCGGACTCCCGTG CCATTGATGCTGTCAGGTTGGATTTCACGTCGAACCATGGTAGCCATACCCACACGTGTATATACCGGTTGCGGGTGCATGGTTATGAACCCGACTCTGG TTCGGTGCTGGCATTGCAGAATTGA
AA sequence Show only first row Show all	>Lus10008933 pacid=23175155 polypeptide=Lus10008933 locus=Lus10008933.g ID=Lus10008933.BGIv1.0 annot-version=v1.0 MSASTVSITANTAAARRRPVLVGEKKSNTIELFPHEAQAKNGGGGGDTGNVIGKDKVAPAQSKDVSHNSIRGEAILERTSKDPVLLRKSNAVNSTVSPRR GRKLAPKPVKPRWVTVASIFTKNFALLIVLVGLVQLIRGLASKSESPHARMTTGLAEIEGRISEVESLLKTTAKMIQVQVEVVDKKIENEIGGLRHEVNQ KLQDRSVNFDTMLKNLETRSEVLEKSIAEIKAGDWLTKDEFGKFYEELKKTKDVQLGEGSHSLDVIRAYAKEIVAKEIEKHAADGLGKVDYALAEGGAFV LKHSEFFGKRSPLGDWLRSTRGVSGAHPDASKMLRPSFGEPGQCFPLKGTSGFVEISLRKAIVPEAITLEHVAKSVAYDRSSAPKDCRVTGWLRGSDIAS PVDTGKTLLAEFTYDLEKSNAQTFNVLTSSDSRAIDAVRLDFTSNHGSHTHTCIYRLRVHGYEPDSGSVLALQN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10008933 [exp]	0	1
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10021466 [exp]	2.0	0.8937
AT2G33730			P-loop containing nucleoside t...		Lus10031509 [exp]	2.4	0.8793
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10037071 [exp]	6.3	0.8608
AT1G02140		MAGO, HAP1, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10029791 [exp]	7.7	0.8727
AT1G52530			unknown protein		Lus10003678 [exp]	8.5	0.8507
AT3G19120			PIF / Ping-Pong family of plan...		Lus10025271 [exp]	9.8	0.8534
AT5G44500			Small nuclear ribonucleoprotei...		Lus10023386 [exp]	10.5	0.8862
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10042113 [exp]	11.5	0.8583
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10031498 [exp]	12.0	0.8354
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Lus10019764 [exp]	12.7	0.8376

Compare expression of checked genes

Lus10008933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.